A scalable SCENIC workflow for single-cell gene regulatory network analysis
active 2023-08-25 → 2026-01-21 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 881 days from 2023-08-25 to 2026-01-21. Pushes: 0 total, peak 0 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 12 total, peak 2 in a day. Comments: 18 total, peak 2 in a day. Stars: 48 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| wuxiangning | 3 | 0 | 0 | 3 |
| Sparsh3101 | 3 | 0 | 0 | 1 |
| chenfengQAQ | 3 | 0 | 0 | 2 |
| maminby | 2 | 0 | 0 | 2 |
| anemartinezlarrinaga2898 | 1 | 0 | 0 | 1 |
| jjacob12 | 1 | 0 | 0 | 0 |
| arunchakra | 1 | 0 | 0 | 1 |
| vagabond12 | 1 | 0 | 0 | 0 |
| Chrisdoan9 | 1 | 0 | 0 | 0 |
| qianxu05172019 | 1 | 0 | 0 | 1 |
| jiangpuxuan | 1 | 0 | 0 | 1 |
| kangjiajinlong | 1 | 0 | 0 | 0 |
| Sophielsn | 1 | 0 | 0 | 1 |
| robertzeibich | 1 | 0 | 0 | 0 |
| clg12 | 1 | 0 | 0 | 0 |
| danli349 | 1 | 0 | 0 | 0 |
| LacquerHed | 1 | 0 | 0 | 1 |
| salihaey | 1 | 0 | 0 | 0 |
| Dingpw | 1 | 0 | 0 | 1 |
| katsturgess | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#89danli3492025-12-31 21:19`pyscenic grn` OSError: [Errno 92] Protocol not available
- Issue comment#75Sophielsn2025-07-01 21:53How long for pyscenic ctx to run?
- Issue comment#75adrien05982025-04-20 20:36How long for pyscenic ctx to run?
- Issue#87jjacob122025-02-09 20:51Suitability of 'expected counts' from Smart-seq2 RSEM analysis as input for SCENIC
- Issue comment#84wuxiangning2025-01-17 04:56AttributeError: module 'numpy' has no attribute 'object'.
- Issue comment#84wuxiangning2025-01-17 04:51AttributeError: module 'numpy' has no attribute 'object'.
- Issue comment#84Sparsh31012025-01-16 16:52AttributeError: module 'numpy' has no attribute 'object'.
- Issue comment#84wuxiangning2025-01-16 16:27AttributeError: module 'numpy' has no attribute 'object'.
- Issue comment#54maminby2024-12-05 11:50nextflow pipeline error: Signatures dataframe is empty
- Issue comment#54maminby2024-12-05 11:44nextflow pipeline error: Signatures dataframe is empty
- Issue#86salihaey2024-11-18 05:23"Clustering of cells based on regulon activity"
- Issue comment#83chenfengQAQ2024-10-28 13:22Inquiry on Comparative Analysis of Regulon Activity Using pySCENIC in different groups.
- Issue comment#83anemartinezlarrinaga28982024-10-23 13:28Inquiry on Comparative Analysis of Regulon Activity Using pySCENIC in different groups.
- Issue#85robertzeibich2024-10-20 05:28How should one interpret or do with those cells assigned to a different cluster by SCENIC?
- Issue#84Sparsh31012024-10-16 11:28AttributeError: module 'numpy' has no attribute 'object'.
- Issue#84Sparsh31012024-10-16 10:05AttributeError: module 'numpy' has no attribute 'object'.
- Issue comment#83chenfengQAQ2024-09-29 15:18Inquiry on Comparative Analysis of Regulon Activity Using pySCENIC in different groups.
- Issue comment#69jiangpuxuan2024-08-08 02:18how to apply SCENIC to another species(zebrafish) except for human,mouse and fly?
- Issue#83chenfengQAQ2024-06-22 16:52Inquiry on Comparative Analysis of Regulon Activity Using pySCENIC in different groups.
- Issue comment#76juniajvs2024-06-05 17:00After running the three Docker steps what next??
- Issue comment#75arunchakra2024-05-20 03:24How long for pyscenic ctx to run?
- Issue comment#71Dingpw2024-04-19 08:13AUCell - AttributeError: 'Series' object has no attribute 'iteritems'
- Issue#82vagabond122024-04-07 10:31nextflow Segmentation fault preprocess_visualize_project_scanpy.py cluster
- Issue comment#43AnjaliS12024-02-14 16:11ImportError: cannot import name 'plot_scatter' from 'scanpy.plotting._tools.scatterplots'
- Issue comment#79qianxu051720192024-01-17 23:06TypeError: void() takes exactly 1 positional argument (0 given)
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 48 stars here means stars gained during the window, not the repo's star count.