R package for phylogenetic tree search under inapplicable-corrected parsimony and custom optimality criteria
active 2026-08-04 → 2026-08-07 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 4 days from 2026-08-04 to 2026-08-07. Pushes: 8 total, peak 6 in a day. Pull requests: 3 total, peak 2 in a day. Issues: 8 total, peak 4 in a day. Comments: 1 total, peak 1 in a day. Stars: 0 total, peak 0 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| ms609 | 20 | 8 | 3 | 1 |
Recent activity
Latest issues, pull requests and releases
- Pull request#178ms6092026-08-07 21:17
- Issue comment#177ms6092026-08-07 19:07Re-audit degenerate-container UB across the codebase, and make the class continuously observable
- Issue#88ms6092026-08-07 16:47A14-20: .SortTokens() rewrites a partial-ambiguity token as full ambiguity (silent when lengths divide)
- Issue#87ms6092026-08-07 16:47A14-19: .CharLengthCache key omits the tree -> cross-tree contamination of ExpectedLength()/rhi
- Issue#94ms6092026-08-07 16:47A14-22: Consistency() returns a bare vector, not the documented matrix, for a 1-pattern dataset
- Issue#112ms6092026-08-07 16:47A14-23: Consistency.R: undocumented NaN returns for constant and autapomorphic characters
- Pull request#173ms6092026-08-07 14:43
- Issue#125ms6092026-08-05 14:12A15-01: the documented `edgeToBreak = -1` "enumerate all one-step trees" contract is broken at 4 of 6 exported entry points, one of them silently
- Issue#88ms6092026-08-05 09:20A14-20: .SortTokens() rewrites a partial-ambiguity token as full ambiguity (silent when lengths divide)
- Pull request#84ms6092026-08-05 08:55
- Issue#38ms6092026-08-04 10:51Lazy `apply_tbr_move` rescore in `tbr_search`
- Issue#13ms6092026-08-04 10:35`unpack_xform` never received the dimension validation `0856748f` added to `ts_sankoff_test`, so the *production* bridge still reads a mis-shaped cost matrix silently.
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 0 stars here means stars gained during the window, not the repo's star count.