starsolo to quantify hERV in scRNAseq
C++ · active 2023-08-15 → 2026-06-07 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1028 days from 2023-08-15 to 2026-06-07. Pushes: 4 total, peak 2 in a day. Pull requests: 10 total, peak 1 in a day. Issues: 637 total, peak 130 in a day. Comments: 812 total, peak 57 in a day. Stars: 630 total, peak 9 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| alexdobin | 253 | 4 | 1 | 231 |
| Torrentfree1 | 38 | 0 | 0 | 0 |
| Fullcrackterbaru | 24 | 0 | 0 | 0 |
| mparker2 | 17 | 0 | 0 | 9 |
| mjsteinbaugh | 12 | 0 | 0 | 11 |
| marktaylor89999 | 12 | 0 | 0 | 12 |
| malonzm1 | 11 | 0 | 0 | 4 |
| Yenaled | 10 | 0 | 0 | 6 |
| apredeus | 10 | 0 | 0 | 7 |
| matosmr | 10 | 0 | 0 | 5 |
| rich-says | 10 | 0 | 0 | 10 |
| mkarikom | 8 | 0 | 0 | 3 |
| codeneeded | 8 | 0 | 0 | 7 |
| zhangjy859 | 8 | 0 | 0 | 5 |
| baryam-say | 8 | 0 | 0 | 3 |
| demir-say | 8 | 0 | 0 | 3 |
| mkazanov | 7 | 0 | 0 | 2 |
| fh4734054 | 7 | 0 | 0 | 0 |
| Mpvrd | 7 | 0 | 0 | 6 |
| repacksoftware344 | 7 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#2686justinblethrow-cloud2026-05-17 06:11
- Issue#2685justinblethrow-cloud2026-05-17 06:10Persistently add named FASTA sequences to an existing genome index
- Issue comment#2600YinanGoodTree2026-03-30 14:34STARsolo 2.7.10b number of unique mapped reads different than Cell Ranger 9.0.0
- Issue comment#2677hu-jie-max2026-03-11 06:15STARsolo detects <200 cells from large 10x 3′ v2 dataset (expected thousands)
- Issue#2677hu-jie-max2026-03-11 06:01STARsolo detects <200 cells from large 10x 3′ v2 dataset (expected thousands)
- Issue comment#2649beltranichiara-vbi2026-02-27 08:43Reason "Average mapped length" could be notably LARGER than "Average input read length"?
- Issue comment#2663S00NYI2026-02-09 19:03GA fails on macOS due to `Failed spawning readFilesCommand`
- Issue comment#2652fredaguas72026-01-19 12:09How to run --soloType CB_UMI_Complex without a whitelist
- Issue comment#2652LeonHafner2026-01-16 11:10How to run --soloType CB_UMI_Complex without a whitelist
- Issue comment#736anoronh42026-01-13 17:04dynamic genome masking
- Issue comment#2594Ckenen2026-01-09 03:00Some reads were mapped to position 0 or beyond the ends of chromosomes when chimeric mapping is enabled.
- Issue comment#2063RobAlbn2025-12-10 11:04Assertion `compressBound(0xff00) < 0x10000' failed when using STAR 2.7.9a
- Issue comment#2063V-Karch2025-12-08 18:40Assertion `compressBound(0xff00) < 0x10000' failed when using STAR 2.7.9a
- Issue#2673RobAlbn2025-12-04 17:54STAR parameter --outSAMattrRGline when using STAR 2.7.9a
- Issue comment#2649rfran0102025-11-11 20:17Reason "Average mapped length" could be notably LARGER than "Average input read length"?
- Issue#2672snipershady2025-11-06 10:47make fail star.cpp
- Issue#267116900782182025-10-28 08:13simulated data
- Issue comment#2238apredeus2025-10-20 11:22STARsolo settings for SMART-seq3
- Issue comment#2238campbell-watchmaker2025-10-17 08:51STARsolo settings for SMART-seq3
- Issue#2667Aastha2000tanu2025-10-17 00:40lot of multi-maaping-hg_38 genome mapping
- Issue comment#2235Roleren2025-10-08 08:57Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to RAM Limit — Can the Genome Be Split for Indexing, or Are There Other Solutions?
- Issue comment#2649Roleren2025-10-08 08:44Reason "Average mapped length" could be notably LARGER than "Average input read length"?
- Issue#2665Liripo2025-09-29 08:58Sequencing saturation changed after adding --soloCBmatchWLtype 1MM_multi_Nbase_pseudocounts
- Issue#2663eboileau2025-09-23 15:20GA fails on macOS due to `Failed spawning readFilesCommand`
- Issue#2662biofcallejas2025-09-19 17:01STAR/STARlong is not working with PacBio Isoseq reads
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 630 stars here means stars gained during the window, not the repo's star count.