An LPhy extension for toroidal diffusion models of evolution
active 2024-07-02 → 2025-07-10 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 374 days from 2024-07-02 to 2025-07-10. Pushes: 209 total, peak 12 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 22 total, peak 4 in a day. Comments: 12 total, peak 4 in a day. Stars: 0 total, peak 0 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| walterxie | 177 | 151 | 0 | 9 |
| clem-xry | 52 | 44 | 0 | 3 |
| alexpopinga | 13 | 13 | 0 | 0 |
| alexeid | 1 | 1 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#14clem-xry2025-04-14 00:48DihedralAngleGibbsSampler
- Issue#14walterxie2025-04-14 00:34DihedralAngleGibbsSampler
- Issue#13walterxie2025-01-30 22:53Caching the likelihood during MCMC
- Issue#12walterxie2025-01-29 22:37Change tree topology
- Issue#9walterxie2025-01-29 22:37Sampling internal node sequence
- Issue#11walterxie2025-01-29 22:37Root angles need to be sampled from equilibrium distribution
- Issue#10walterxie2025-01-17 02:22Wrapped Normal Diffusion simulator
- Issue comment#11walterxie2025-01-16 22:51Root angles need to be sampled from equilibrium distribution
- Issue#11walterxie2025-01-14 22:29Root angles need to be sampled from equilibrium distribution
- Issue comment#9walterxie2025-01-13 22:03Sampling internal node sequence
- Issue#10walterxie2025-01-07 03:45Wrapped Normal Diffusion simulator
- Issue comment#9walterxie2025-01-06 21:23Sampling internal node sequence
- Issue comment#9walterxie2025-01-06 21:23Sampling internal node sequence
- Issue comment#9walterxie2025-01-06 21:23Sampling internal node sequence
- Issue comment#9walterxie2025-01-06 21:23Sampling internal node sequence
- Issue#9walterxie2025-01-06 21:22Sampling internal node sequence
- Issue comment#8walterxie2024-11-25 01:04MathIllegalStateException during simulation
- Issue#4walterxie2024-11-12 22:29log DihedralAngleAlignment
- Issue#3walterxie2024-11-12 22:29Implement beast2 classes
- Issue#1walterxie2024-11-12 22:29merge to Maven project
- Issue#5walterxie2024-11-12 22:29data augmentation tree likelihood
- Issue#7walterxie2024-11-06 21:38getTaxa() directly from TimeTree
- Issue#6clem-xry2024-09-25 03:55LphyBeast code
- Issue#5walterxie2024-08-22 03:01data augmentation tree likelihood
- Issue#4clem-xry2024-08-22 01:37log DihedralAngleAlignment
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 0 stars here means stars gained during the window, not the repo's star count.