A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and covariation patterns between interacted cell types.
active 2023-12-03 → 2025-12-31 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 760 days from 2023-12-03 to 2025-12-31. Pushes: 134 total, peak 18 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 11 total, peak 1 in a day. Comments: 15 total, peak 3 in a day. Stars: 10 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| ankitbioinfo | 143 | 133 | 0 | 9 |
| kewinds | 6 | 0 | 0 | 3 |
| reinertanalytics | 4 | 0 | 0 | 2 |
| Laolga | 2 | 0 | 0 | 1 |
| perl-xxp | 1 | 0 | 0 | 0 |
| xwangda | 1 | 0 | 0 | 0 |
| bmateosa | 1 | 0 | 0 | 0 |
| gitbook-com[bot] | 1 | 1 | 0 | 0 |
| annachernysheva179 | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#12ankitbioinfo2025-12-31 09:58covariation analysis
- Issue#12perl-xxp2025-12-11 06:46covariation analysis
- Issue comment#7kewinds2025-06-30 23:53NiCo on multilple sections
- Issue comment#7ankitbioinfo2025-06-13 14:26NiCo on multilple sections
- Issue comment#8ankitbioinfo2025-05-08 06:06Large proportion of "NM" cells
- Issue comment#8Laolga2025-05-07 14:24Large proportion of "NM" cells
- Issue#8Laolga2025-05-07 14:16Large proportion of "NM" cells
- Issue comment#7kewinds2025-04-24 23:01NiCo on multilple sections
- Issue comment#7ankitbioinfo2025-04-24 06:47NiCo on multilple sections
- Issue#7kewinds2025-04-24 03:34NiCo on multilple sections
- Issue comment#6ankitbioinfo2025-03-29 06:02Visium HD
- Issue#6bmateosa2025-03-27 13:22Visium HD
- Issue comment#5kewinds2025-02-16 03:27KeyError in gene_covariation_analysis
- Issue#5kewinds2025-02-16 03:27KeyError in gene_covariation_analysis
- Issue#5kewinds2025-02-15 17:48KeyError in gene_covariation_analysis
- Issue#4xwangda2025-01-14 09:03NiCoLRdb.txt for mouse?
- Issue comment#3ankitbioinfo2025-01-08 20:14Error with gene_covariation_analysis function
- Issue comment#3reinertanalytics2025-01-08 19:39Error with gene_covariation_analysis function
- Issue comment#3ankitbioinfo2025-01-08 19:33Error with gene_covariation_analysis function
- Issue#3reinertanalytics2025-01-08 19:12Error with gene_covariation_analysis function
- Issue#2ankitbioinfo2024-12-14 21:26Running NiCo on an integrated object
- Issue comment#2reinertanalytics2024-11-25 17:36Running NiCo on an integrated object
- Issue comment#2ankitbioinfo2024-11-19 20:08Running NiCo on an integrated object
- Issue#2reinertanalytics2024-11-19 17:17Running NiCo on an integrated object
- Issue comment#1ankitbioinfo2024-10-11 12:33KeyError in gene_covariation_analysis
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 10 stars here means stars gained during the window, not the repo's star count.