DEP package. Bioconductor link: https://www.bioconductor.org/packages/release/bioc/html/DEP.html
active 2023-09-04 → 2025-06-10 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 646 days from 2023-09-04 to 2025-06-10. Pushes: 0 total, peak 0 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 6 total, peak 1 in a day. Comments: 8 total, peak 3 in a day. Stars: 8 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| ericloud | 2 | 0 | 0 | 2 |
| sumuko98 | 2 | 0 | 0 | 2 |
| mbihie | 1 | 0 | 0 | 0 |
| ahsenu00 | 1 | 0 | 0 | 0 |
| kamilanykiel | 1 | 0 | 0 | 1 |
| avanthi96 | 1 | 0 | 0 | 0 |
| abdelrhmannabil | 1 | 0 | 0 | 1 |
| fedeserral | 1 | 0 | 0 | 0 |
| mathilderesell | 1 | 0 | 0 | 0 |
| ecologysarah | 1 | 0 | 0 | 1 |
| AkilaWijerathnaYapa | 1 | 0 | 0 | 0 |
| KristinaGomoryova | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#37ecologysarah2025-06-10 08:34Error in .ebayes(fit = fit, proportion = proportion, stdev.coef.lim = stdev.coef.lim, : No finite residual standard deviations
- Issue comment#37abdelrhmannabil2025-01-18 18:40Error in .ebayes(fit = fit, proportion = proportion, stdev.coef.lim = stdev.coef.lim, : No finite residual standard deviations
- Issue comment#34sumuko982024-12-10 20:57How to extract proteins from PCs in plot_pca in DEP package
- Issue comment#34ericloud2024-12-10 16:26How to extract proteins from PCs in plot_pca in DEP package
- Issue comment#34sumuko982024-12-10 16:22How to extract proteins from PCs in plot_pca in DEP package
- Issue#42avanthi962024-10-03 18:57Fold change in results doesn't align with LFQ intensities
- Issue#41fedeserral2024-07-31 19:40filter_missval function
- Issue#40ahsenu002024-03-06 13:37plot_heatmap function not working as data_results gives 0 significant proteins
- Issue comment#39ericloud2024-02-19 18:50P adiusted bigger than p value?
- Issue#38AkilaWijerathnaYapa2024-01-30 04:16How to plot heat map for average values per sample?
- Issue comment#26kamilanykiel2024-01-06 10:21Error in using interactive analysis using the DEP Shiny apps
- Issue#37mbihie2023-12-10 22:32Error in .ebayes(fit = fit, proportion = proportion, stdev.coef.lim = stdev.coef.lim, : No finite residual standard deviations
- Issue#36mathilderesell2023-11-22 14:56Cannot download DEP package
- Issue comment#30KristinaGomoryova2023-09-04 11:56plot_heatmap: extract specific cluster group from heatmap
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 8 stars here means stars gained during the window, not the repo's star count.