SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
Jupyter Notebook · active 2023-08-24 → 2026-05-09 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 990 days from 2023-08-24 to 2026-05-09. Pushes: 18 total, peak 6 in a day. Pull requests: 7 total, peak 3 in a day. Issues: 64 total, peak 14 in a day. Comments: 136 total, peak 11 in a day. Stars: 36 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| atarashansky | 84 | 18 | 6 | 44 |
| dariotommasini | 28 | 0 | 0 | 20 |
| dsb66 | 13 | 0 | 0 | 10 |
| GGboy-Zzz | 5 | 0 | 0 | 4 |
| zEpoch | 5 | 0 | 1 | 3 |
| DiracZhu1998 | 4 | 0 | 0 | 2 |
| Rong-ao | 4 | 0 | 0 | 4 |
| dnjst | 4 | 0 | 0 | 2 |
| Lil-Psilocybe | 4 | 0 | 0 | 3 |
| laracbusby | 3 | 0 | 0 | 0 |
| zhuojiuqingyun | 3 | 0 | 0 | 3 |
| Budjavac | 3 | 0 | 0 | 1 |
| jowodo | 3 | 0 | 0 | 1 |
| jdmontenegro | 3 | 0 | 0 | 2 |
| zhongzheng1999 | 3 | 0 | 0 | 1 |
| colinshew | 2 | 0 | 0 | 1 |
| xmChen090 | 2 | 0 | 0 | 1 |
| cghchuwudai | 2 | 0 | 0 | 2 |
| Zruni0710 | 2 | 0 | 0 | 2 |
| RobTesf | 2 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#168zhuojiuqingyun2026-03-31 05:26The blast scores of the gene_pairs output by gpf.find_all are all 0
- Issue#118atarashansky2026-03-31 05:18Gene Pair Finder Giving "ValueError: negative dimensions are not allowed"
- Issue comment#154atarashansky2026-03-31 05:17Adapting GenePairFinder to identify gene pairs with divergent expression in a pair of clusters?
- Issue comment#166atarashansky2026-03-31 05:17Expression correlation threshold for gene pairs
- Issue#168atarashansky2026-03-31 05:17The blast scores of the gene_pairs output by gpf.find_all are all 0
- Issue#167atarashansky2026-03-31 05:17No output for SAMGUI and AttributeError for display_heatmap()
- Issue#165atarashansky2026-03-31 05:17UMAP celltype unasignned
- Issue#163atarashansky2026-03-31 05:17map_genes.sh
- Issue#161atarashansky2026-03-31 05:17'keys' in get_mapping_scores and GenePairFinder
- Issue#160atarashansky2026-03-31 05:17TypingError: Failed in nopython mode pipeline (step: nopython frontend) Failed in nopython mode pipeline (step: native lowering)
- Issue#158atarashansky2026-03-31 05:17TypeError: __init__() got multiple values for argument 'f_maps'
- Issue comment#160atarashansky2026-03-31 05:17TypingError: Failed in nopython mode pipeline (step: nopython frontend) Failed in nopython mode pipeline (step: native lowering)
- Issue comment#158atarashansky2026-03-31 05:17TypeError: __init__() got multiple values for argument 'f_maps'
- Issue#150atarashansky2026-03-31 05:17'coo_matrix' object has no attribute 'A'
- Issue comment#148atarashansky2026-03-31 05:17ImportError: cannot import name 'get_cmap' from 'matplotlib.cm'
- Issue#145atarashansky2026-03-31 05:17Bug to run the SAMap algorithm
- Issue#136atarashansky2026-03-31 05:17Tagging Version
- Issue comment#137atarashansky2026-03-31 05:17conda install: can't import samap
- Issue#134atarashansky2026-03-31 05:16Combined umap for 1 cell lineage, retrieving latent representation
- Issue comment#134atarashansky2026-03-31 05:16Combined umap for 1 cell lineage, retrieving latent representation
- Issue#133atarashansky2026-03-31 05:16sankey and chord plot error
- Issue#127atarashansky2026-03-31 05:16error in runing map_genes.sh
- Issue comment#127atarashansky2026-03-31 05:16error in runing map_genes.sh
- Issue comment#119atarashansky2026-03-31 05:16Multi-species cell type network plot
- Issue comment#117atarashansky2026-03-31 05:16UMAP looks like a line when neighborhood size was determined by using cell type labels
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 36 stars here means stars gained during the window, not the repo's star count.