Pipeline for the analysis of the clonal structure of tissues. It takes advantage of the availability of information about the sequencing depth.
active 2025-07-07 → 2026-08-05 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 395 days from 2025-07-07 to 2026-08-05. Pushes: 278 total, peak 8 in a day. Pull requests: 49 total, peak 3 in a day. Issues: 78 total, peak 9 in a day. Comments: 189 total, peak 14 in a day. Stars: 0 total, peak 0 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| FerriolCalvet | 387 | 184 | 39 | 77 |
| Copilot | 88 | 12 | 1 | 47 |
| m-huertasp | 74 | 31 | 3 | 27 |
| efigb | 23 | 14 | 1 | 3 |
| bkohrn | 21 | 0 | 0 | 14 |
| migrau | 17 | 11 | 2 | 3 |
| FedericaBrando | 15 | 0 | 0 | 11 |
| koszulordie | 11 | 8 | 0 | 3 |
| rblancomi | 8 | 8 | 0 | 0 |
| rochamorro1 | 3 | 3 | 0 | 0 |
| St3451 | 2 | 0 | 0 | 2 |
| scottrk | 1 | 0 | 0 | 0 |
| github-actions[bot] | 1 | 1 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#461FerriolCalvet2026-05-31 09:57Errors with version 1.1.0
- Issue#453efigb2026-05-13 12:55apply flagged genes per group in omega plots per group
- ReleaseFerriolCalvet2026-04-11 15:20v1.1.0 Bastareny
- Issue comment#444FerriolCalvet2026-04-11 15:11add dynamic RefCDS definition for dNdScv
- Pull request#444FerriolCalvet2026-04-11 15:11
- Issue comment#398FerriolCalvet2026-04-11 14:17add computation of mutation density at whole-genome level
- Issue comment#390migrau2026-04-10 09:24Dev chunk optimization postprocessveppanel
- Issue#369FerriolCalvet2026-03-29 21:07Add ID signatures in sigprofilerAssignment
- Issue#369FerriolCalvet2026-03-29 21:02Add ID signatures in sigprofilerAssignment
- Issue comment#390migrau2026-03-22 06:25Dev chunk optimization postprocessveppanel
- Issue comment#390FerriolCalvet2026-03-20 11:45Dev chunk optimization postprocessveppanel
- Issue#435FerriolCalvet2026-03-20 11:13Use minimum average depth parameter when running with custom depths
- Issue comment#433FerriolCalvet2026-03-20 10:52Add profile smoothing
- Pull request#431FerriolCalvet2026-03-14 11:24
- Issue comment#431Copilot2026-03-13 19:21miscellaneous updates
- Issue comment#431FerriolCalvet2026-03-13 19:21miscellaneous updates
- Issue#329FerriolCalvet2026-03-06 10:12Use canonical colors for MutType plots
- Issue comment#139FerriolCalvet2026-03-06 08:45Documentation needed
- Pull request#425FerriolCalvet2026-03-06 08:43
- Issue#229FerriolCalvet2026-03-03 11:42use panel annotation to define already the protein position of each CDS position
- Issue#54FerriolCalvet2026-02-26 14:35Move positive selection methods to a new subworkflow on its own
- Issue#236FerriolCalvet2026-02-26 14:34SigProfilerExtractor
- Issue#298FerriolCalvet2026-02-26 14:26Run SigProfilerAssignment with the pipeline output of HDP
- Issue comment#145efigb2026-02-25 12:00Enhance the analysis of depths
- Pull request#424efigb2026-02-25 11:56
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 0 stars here means stars gained during the window, not the repo's star count.