BBTools: Official suite of fast, multithreaded bioinformatics tools for DNA/RNA analysis. BBMap aligner, BBDuk trimmer, BBMerge, and 90+ other tools. Actively maintained by Brian Bushnell.
active 2025-08-21 → 2026-08-17 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 362 days from 2025-08-21 to 2026-08-17. Pushes: 278 total, peak 6 in a day. Pull requests: 2 total, peak 2 in a day. Issues: 5 total, peak 1 in a day. Comments: 4 total, peak 2 in a day. Stars: 27 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
Recent activity
Latest issues, pull requests and releases
- Releasebbushnell2026-04-27 22:33v39.82
- Issue comment#18bsaintjo2026-04-15 22:47calctruequality.sh - Exception in thread "main" java.lang.AssertionError with callvars
- Issue#18masalgar2026-04-14 22:34calctruequality.sh - Exception in thread "main" java.lang.AssertionError with callvars
- Issue comment#17mmokrejs2026-04-07 19:43Aggressive Sequence Identifier Truncation with `ignorejunk=t` in filterbyname.sh v39.62
- Issue comment#17bsaintjo2026-04-07 18:20Aggressive Sequence Identifier Truncation with `ignorejunk=t` in filterbyname.sh v39.62
- Issue#10eboyden2026-03-07 22:27bug: bbmerge.sh hangs on v39.56 and up, apparently related to threading
- Issue#9schorlton-bugseq2026-02-24 03:35Error in FASTQ, record 0, with these 4 lines: (missing plus)
- Issue comment#8daeho-ro2026-01-11 04:35[BUG?] Unable to recognize fq.gz file as a gzip file
- Issue#5TomHarrop2025-11-15 10:41Problem running shred with certain values of `length`
- Pull request#2teojcryan2025-11-10 13:15
- Pull request#2teojcryan2025-11-10 13:15
- Issue#1AJL072025-09-12 15:21Deduplication of optical reads with clumpify doesn't work
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 27 stars here means stars gained during the window, not the repo's star count.