Nanopore sequence read simulator
active 2023-08-18 → 2026-03-04 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 930 days from 2023-08-18 to 2026-03-04. Pushes: 34 total, peak 4 in a day. Pull requests: 26 total, peak 4 in a day. Issues: 61 total, peak 8 in a day. Comments: 138 total, peak 10 in a day. Stars: 100 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| lcoombe | 83 | 16 | 18 | 38 |
| SaberHQ | 39 | 8 | 2 | 23 |
| kmnip | 18 | 7 | 1 | 10 |
| ezherman | 17 | 0 | 0 | 11 |
| SimonHegele | 7 | 0 | 0 | 4 |
| dlaehnemann | 7 | 0 | 1 | 5 |
| mfbeuq | 7 | 0 | 0 | 4 |
| Evandio-Martin | 7 | 0 | 0 | 3 |
| berkeucar | 6 | 3 | 1 | 1 |
| capoony | 6 | 0 | 0 | 3 |
| warrenlr | 5 | 0 | 0 | 4 |
| npdungca | 4 | 0 | 0 | 3 |
| puwanat-s | 4 | 0 | 0 | 4 |
| aerusakovich | 4 | 0 | 0 | 1 |
| HLHsieh | 4 | 0 | 0 | 3 |
| fgvieira | 4 | 0 | 0 | 4 |
| weishwu | 4 | 0 | 0 | 1 |
| mochew | 3 | 0 | 0 | 3 |
| ammaraziz | 3 | 0 | 0 | 1 |
| hasindu2008 | 3 | 0 | 0 | 2 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#251lcoombe2026-03-04 18:18Error when trying to fit a metagenome
- Issue comment#251lcoombe2026-02-26 20:38Error when trying to fit a metagenome
- Issue comment#251thednainus2026-02-24 15:32Error when trying to fit a metagenome
- Pull request#248LET192025-11-28 02:35
- Issue comment#247ezherman2025-07-17 15:21Mismatch in read quality between input and simulated reads
- Issue comment#247ezherman2025-07-17 13:21Mismatch in read quality between input and simulated reads
- Issue#247ezherman2025-07-17 13:05Mismatch in read quality between input and simulated reads
- Issue#246npdungca2025-07-13 04:31ValueError: maximum supported dimension for an ndarray is 32, found 400000
- Issue#185danpal962025-04-10 21:00Infinite loop in function extract_reads in metagenome mode when length equals max length
- Issue comment#244SimonHegele2025-04-03 08:47Non-zero error rates for perfect reads
- Issue comment#244warrenlr2025-03-31 17:33Non-zero error rates for perfect reads
- Issue#244SimonHegele2025-03-31 09:33Non-zero error rates for perfect reads
- Issue#243florenmartino2025-03-06 04:20FileNotFoundError: No such file or directory when using pre-trained model
- Issue#198SaberHQ2025-02-13 06:48Models for newer versions of Guppy with sup basecalls
- Issue comment#198hasindu20082025-02-12 07:06Models for newer versions of Guppy with sup basecalls
- Issue comment#198dlaehnemann2025-02-11 12:18Models for newer versions of Guppy with sup basecalls
- Issue comment#241dlaehnemann2025-02-10 16:40simulating nanopore samples with a fixed mean read length (to achieve a wanted coverage value)
- Issue comment#241berkeucar2025-02-10 16:33simulating nanopore samples with a fixed mean read length (to achieve a wanted coverage value)
- Issue comment#241dlaehnemann2025-02-10 09:48simulating nanopore samples with a fixed mean read length (to achieve a wanted coverage value)
- Issue#241berkeucar2025-02-07 20:58simulating nanopore samples with a fixed mean read length (to achieve a wanted coverage value)
- Releaseberkeucar2025-02-07 19:35v3.2.3
- Pull request#242berkeucar2025-02-05 03:22
- Issue#241dlaehnemann2025-02-03 17:49simulating nanopore samples with a fixed mean read length (to achieve a wanted coverage value)
- Issue comment#240lcoombe2024-11-21 16:08Metagenomic mode Help with read_analysis.py
- Issue#240florenmartino2024-11-21 15:44Metagenomic mode Help with read_analysis.py: Understanding genome_list and abundanHelp with read_analysis.py: Understanding genome_list and abundance inputce input
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 100 stars here means stars gained during the window, not the repo's star count.