Automated processing of Sanger sequencing data, taxonomic profiling, and generation of microbial strain libraries
active 2023-08-16 → 2026-01-04 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 873 days from 2023-08-16 to 2026-01-04. Pushes: 84 total, peak 16 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 30 total, peak 4 in a day. Comments: 23 total, peak 4 in a day. Stars: 12 total, peak 4 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| bdaisley | 100 | 74 | 0 | 15 |
| vancurens | 17 | 10 | 0 | 1 |
| xmeng | 8 | 0 | 0 | 4 |
| fwhelan | 3 | 0 | 0 | 1 |
| thivetalexane | 2 | 0 | 0 | 1 |
| lxsteiner | 2 | 0 | 0 | 1 |
| izhang73 | 1 | 0 | 0 | 0 |
| DioufMouss0 | 1 | 0 | 0 | 0 |
| jmc-12345 | 1 | 0 | 0 | 0 |
| Qwertille42 | 1 | 0 | 0 | 0 |
| BisanzLab | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Releasebdaisley2026-01-04 21:41isolateR 1.0.6
- Issue#20DioufMouss02025-12-11 20:21sanger_assembly issue
- Issue comment#19thivetalexane2025-11-14 18:32Shift in isoTAX columns
- Issue#19bdaisley2025-11-14 16:33Shift in isoTAX columns
- Issue comment#19bdaisley2025-11-14 16:33Shift in isoTAX columns
- Issue#19thivetalexane2025-11-13 21:47Shift in isoTAX columns
- Issue#16bdaisley2025-10-31 21:42File path issue for isoTAX
- Releasebdaisley2025-10-31 21:26isolateR 1.0.3
- Issue comment#17bdaisley2025-10-31 02:38Error message after running isoQC?
- Issue#17jmc-123452025-09-11 13:33Error message after running isoQC?
- Issue#16BisanzLab2025-06-06 21:31File path issue for isoTAX
- Issue#15izhang732025-02-21 23:24Unused argument (staplewidth = 0) with export_html=TRUE for isoQC function
- Issue comment#13bdaisley2025-01-20 18:59Custom db not available for isoALL
- Issue#13bdaisley2025-01-20 18:59Custom db not available for isoALL
- Issue comment#7bdaisley2025-01-20 18:01Error installing isolateR in R 4.4.0 on Windows 10 and 11
- Issue#7bdaisley2025-01-20 18:01Error installing isolateR in R 4.4.0 on Windows 10 and 11
- Issue comment#14bdaisley2025-01-20 17:58Taxonomic classifications offset by Kingdom
- Issue#14bdaisley2025-01-20 17:58Taxonomic classifications offset by Kingdom
- Issue#14vancurens2024-12-13 15:07Taxonomic classifications offset by Kingdom
- Issue#13Qwertille422024-11-11 15:35Custom db not available for isoALL
- Issue comment#9lxsteiner2024-08-26 20:25FASTA as input for `isoTAX`?
- Issue comment#11xmeng2024-08-15 22:51An assembly function?
- Issue#11xmeng2024-08-15 22:51An assembly function?
- Issue comment#12bdaisley2024-08-12 21:22isoQC parameter 'keep_old_reps=TRUE' fails in rare cases when merging new + old isoLIB files
- Issue#12bdaisley2024-08-12 21:19isoQC parameter 'keep_old_reps=TRUE' fails in rare cases when merging new + old isoLIB files
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 12 stars here means stars gained during the window, not the repo's star count.