Uncertainty quantification and calibration of reaction models with Markov-Chain Monte Carlo, with flexible and composable models for the likelihood and corpus of constraints
active 2025-06-03 → 2026-08-11 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 435 days from 2025-06-03 to 2026-08-11. Pushes: 109 total, peak 6 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 26 total, peak 6 in a day. Comments: 12 total, peak 2 in a day. Stars: 2 total, peak 2 in a day.
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- Issues
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- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
Recent activity
Latest issues, pull requests and releases
- Issue comment#34beykyle2026-03-02 02:59alpha release
- Issue comment#23beykyle2025-08-26 17:01Pass history between batches in adaptive metropolis
- Issue#23beykyle2025-08-26 17:01Pass history between batches in adaptive metropolis
- Issue#25beykyle2025-08-06 20:53Add block/UML diagram of class structure to readme/documentation
- Issue comment#18beykyle2025-08-06 20:47Add boundary check to proposal sampler for MH
- Issue#23beykyle2025-08-05 16:16Pass history between batches in adaptive metropolis
- Issue#21beykyle2025-08-05 06:20Add empirical coverage, $\chi^2$ distribution, visualizable posterior-predictive distributions (and their credible intervals) as convenience functions to `Walker` (calling functions in `Evidence`)
- Issue comment#13beykyle2025-08-05 06:17Sample log of unknown error, not full error
- Issue#13beykyle2025-08-05 06:17Sample log of unknown error, not full error
- Issue comment#3beykyle2025-07-21 21:38Add simple reaction model fitting examples
- Issue#3beykyle2025-07-21 21:38Add simple reaction model fitting examples
- Issue comment#16beykyle2025-07-09 17:28Updates `Walker` to start calibration from previous state
- Issue#16beykyle2025-07-09 17:28Updates `Walker` to start calibration from previous state
- Issue comment#16beykyle2025-07-03 20:30Updates `Walker` to start calibration from previous state
- Issue#20beykyle2025-07-03 20:29Simplify the process of using a single rng for everything
- Issue#20beykyle2025-07-02 17:46Simplify the process of using a single rng for everything
- Issue#19beykyle2025-07-02 17:30Thread-level shared-memory parallelism for evaluating log-likelihood for single parameter state
- Issue#18beykyle2025-07-02 17:29Add boundary check to proposal sampler
- Issue comment#16beykyle2025-07-02 17:27Updates `Walker` to start calibration from previous state
- Issue#17beykyle2025-07-02 17:25Integrate MPI into `Walker`
- Issue#16beykyle2025-07-02 17:24Updates `Walker` to start calibration from previous state
- Issue#6beykyle2025-07-02 17:22Run multiple chains in parallel in sys err demo and handle autocorrelation by drawing samples from chains
- Issue#15beykyle2025-06-20 22:52Change name of `Corpus` to `Evidence`
- Issue comment#14beykyle2025-06-20 22:51Generalize systematic errors to non-constant ratios
- Issue#14beykyle2025-06-19 20:26Generalize systematic errors to non-constant ratios
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 2 stars here means stars gained during the window, not the repo's star count.