A Python tool for high-throughput retrieval of protein and/or gene sequences from NCBI GenBank for single or multiple taxa.
active 2025-01-02 → 2026-01-07 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 371 days from 2025-01-02 to 2026-01-07. Pushes: 94 total, peak 35 in a day. Pull requests: 10 total, peak 3 in a day. Issues: 14 total, peak 4 in a day. Comments: 20 total, peak 4 in a day. Stars: 1 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| SchistoDan | 115 | 94 | 6 | 13 |
| hrhotz | 10 | 0 | 1 | 4 |
| bwprice | 6 | 0 | 2 | 0 |
| ManavalanG | 5 | 0 | 0 | 2 |
| abhishektiwari | 1 | 0 | 1 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#26SchistoDan2026-01-07 10:24
- Issue comment#25SchistoDan2025-12-12 15:4328S fetching failing
- Issue#24SchistoDan2025-12-05 12:23Some missed 18S sequences/search term suggestion
- ReleaseSchistoDan2025-11-20 12:36v1.0.19
- Issue#22bwprice2025-11-03 19:02fasta header shouldn't match search term
- Issue#22bwprice2025-11-03 19:02fasta header shouldn't match search term
- Issue#22bwprice2025-11-03 19:02fasta header shouldn't match search term
- Issue#21bwprice2025-11-03 18:59configure traversal of higher taxonomy
- ReleaseSchistoDan2025-09-23 14:17Version 1.0.17
- Pull request#20abhishektiwari2025-08-09 13:32
- Issue comment#16SchistoDan2025-08-06 15:16Relatively minor improvements [JOSS]
- Issue#17ManavalanG2025-08-05 17:47Some retrieved sequences don't match the query gene [JOSS]
- Issue comment#16SchistoDan2025-08-05 17:15Relatively minor improvements [JOSS]
- Issue comment#16ManavalanG2025-08-05 03:59Relatively minor improvements [JOSS]
- Issue#19ManavalanG2025-08-05 03:45Benchmarking
- Issue comment#17ManavalanG2025-08-05 03:04Some retrieved sequences don't match the query gene [JOSS]
- Issue#15ManavalanG2025-08-05 02:46Version info option is missing [JOSS]
- Issue comment#18SchistoDan2025-07-28 12:57Output directory structure does not match the documented structure in readme [JOSS]
- Issue comment#17SchistoDan2025-07-28 12:36Some retrieved sequences don't match the query gene [JOSS]
- Issue comment#16SchistoDan2025-07-28 11:49Relatively minor improvements [JOSS]
- Issue comment#15SchistoDan2025-07-28 11:31Version info option is missing [JOSS]
- Issue comment#14ManavalanG2025-07-22 02:51Unit tests failing
- Issue comment#14SchistoDan2025-07-14 10:04Unit tests failing
- Issue#12hrhotz2025-07-08 07:39Supported targets
- Issue#11hrhotz2025-07-08 07:31skipping existing sequences
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 1 stars here means stars gained during the window, not the repo's star count.