Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
active 2023-08-15 → 2026-08-13 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1095 days from 2023-08-15 to 2026-08-13. Pushes: 42 total, peak 14 in a day. Pull requests: 8 total, peak 1 in a day. Issues: 24 total, peak 2 in a day. Comments: 52 total, peak 3 in a day. Stars: 21 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| meenachakra | 58 | 33 | 3 | 19 |
| yipinto | 22 | 7 | 1 | 10 |
| efratmuller | 8 | 0 | 0 | 2 |
| amgroth | 5 | 0 | 0 | 4 |
| try-hunter | 4 | 0 | 0 | 2 |
| cosnicolaou | 4 | 2 | 0 | 2 |
| RChGO | 3 | 0 | 0 | 1 |
| DrYoungOG | 2 | 0 | 0 | 1 |
| lexikazen | 2 | 0 | 0 | 1 |
| manishsinha002 | 2 | 0 | 0 | 2 |
| alienzj | 2 | 0 | 2 | 0 |
| zhangwenda0518 | 2 | 0 | 0 | 2 |
| CarsonJM | 2 | 0 | 0 | 2 |
| njohner | 2 | 0 | 2 | 0 |
| YiJessePi | 1 | 0 | 0 | 1 |
| camilagazolla | 1 | 0 | 0 | 0 |
| bablukr056 | 1 | 0 | 0 | 1 |
| mhmism | 1 | 0 | 0 | 0 |
| Iris7788 | 1 | 0 | 0 | 1 |
| rdenise | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#66meenachakra2025-11-14 15:00How to run the filtering steps independently
- Issue comment#66yipinto2025-11-13 16:56How to run the filtering steps independently
- Issue comment#66zhangwenda05182025-11-12 06:49How to run the filtering steps independently
- Issue comment#66zhangwenda05182025-11-12 06:29How to run the filtering steps independently
- Issue comment#64minukpark12282025-10-25 17:25i have issue but i don't know how to solve problem help me..
- Issue comment#61yipinto2025-09-25 09:51Question about correlation p-values
- Issue#61lexikazen2025-09-18 16:40Question about correlation p-values
- Issue comment#60lexikazen2025-09-11 20:13UnboundLocalError running test dataset
- Issue comment#60meenachakra2025-09-11 18:57UnboundLocalError running test dataset
- Issue comment#59meenachakra2025-08-27 01:23Databases for 300bp single-end reads
- Issue comment#58meenachakra2025-08-15 04:38Which database would be better?
- Issue comment#58manishsinha0022025-08-15 02:59Which database would be better?
- Issue comment#58meenachakra2025-08-15 00:20Which database would be better?
- Issue comment#58manishsinha0022025-08-14 17:16Which database would be better?
- Releasemeenachakra2025-07-09 13:56Phanta version 1.1.1
- Issue comment#57meenachakra2025-07-09 04:50Need to update kraken2 version to avoid unexpected behavior when using multiple threads
- Issue comment#57meenachakra2025-07-03 16:46Need to update kraken2 version to avoid unexpected behavior when using multiple threads
- Issue#57efratmuller2025-07-03 10:31Need to update kraken2 version to avoid unexpected behavior when using multiple threads
- Issue#56RChGO2025-06-26 06:30Questions on species/strain-Level precision and recall metrics
- Issue comment#56RChGO2025-06-26 06:30Questions on species/strain-Level precision and recall metrics
- Issue comment#56meenachakra2025-06-26 06:21Questions on species/strain-Level precision and recall metrics
- Issue#56RChGO2025-06-26 06:04Questions on species/strain-Level precision and recall metrics
- Issue comment#55try-hunter2025-04-07 14:44Error with example
- Issue#55try-hunter2025-04-07 14:44Error with example
- Issue comment#55meenachakra2025-04-06 16:49Error with example
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 21 stars here means stars gained during the window, not the repo's star count.