Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
active 2023-08-17 → 2026-08-09 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1089 days from 2023-08-17 to 2026-08-09. Pushes: 168 total, peak 13 in a day. Pull requests: 160 total, peak 6 in a day. Issues: 138 total, peak 7 in a day. Comments: 857 total, peak 25 in a day. Stars: 25 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| ypriverol | 558 | 114 | 96 | 192 |
| jpfeuffer | 238 | 13 | 2 | 177 |
| Copilot | 129 | 13 | 9 | 52 |
| daichengxin | 109 | 9 | 26 | 53 |
| coderabbitai[bot] | 102 | 0 | 0 | 81 |
| github-actions[bot] | 58 | 0 | 0 | 58 |
| jspaezp | 49 | 0 | 1 | 26 |
| enryH | 43 | 17 | 2 | 14 |
| timosachsenberg | 39 | 0 | 0 | 37 |
| qodo-merge-pro[bot] | 39 | 0 | 7 | 32 |
| thanadol-git | 17 | 0 | 0 | 15 |
| qodo-code-review[bot] | 17 | 0 | 4 | 10 |
| jonasscheid | 15 | 0 | 0 | 13 |
| NikoHensley | 12 | 0 | 0 | 11 |
| vdemichev | 11 | 0 | 0 | 11 |
| fabianegli | 8 | 0 | 1 | 3 |
| lazear | 7 | 0 | 0 | 7 |
| weizhongchun | 6 | 0 | 2 | 3 |
| jackrogan | 5 | 0 | 0 | 5 |
| WangHong007 | 4 | 0 | 0 | 3 |
Recent activity
Latest issues, pull requests and releases
- Issue#717ypriverol2026-08-07 19:41Follow-up: add explicit SAGE coverage for consensus feature union introduced in latest PR
- Issue comment#439ypriverol2026-04-20 09:54Include newest DIA-NN version (1.9.2)
- Pull request#701ypriverol2026-04-15 05:44
- Pull request#702ypriverol2026-04-14 10:18
- Issue comment#699codacy-production[bot]2026-04-13 15:34[WIP] Fix comet version being null in pmultiqc
- Issue#698ypriverol2026-04-13 15:33quantms comet version is null in pmultiqc
- Issue#698ypriverol2026-04-13 15:33quantms comet version is null in pmultiqc
- Issue comment#692qodo-code-review[bot]2026-04-04 20:00Major refactoring in the Isobaric workflow enabling to work similar to proteomicsLFQ
- Issue comment#692qodo-code-review[bot]2026-04-03 10:55Major refactoring in the Isobaric workflow enabling to work similar to proteomicsLFQ
- Issue comment#692github-actions[bot]2026-04-03 10:46Major refactoring in the Isobaric workflow enabling to work similar to proteomicsLFQ
- Issue comment#693qodo-code-review[bot]2026-04-03 10:17fix: IsobaricWorkflow - auto-detect labelling type, pass isotope correction and extraction params
- Issue comment#692codacy-production[bot]2026-04-03 10:17Major refactoring in the Isobaric workflow enabling to work similar to proteomicsLFQ
- Pull request#690ypriverol2026-04-03 06:58
- Issue#688enryH2026-03-25 20:41Typo in openms_peak_picker
- Issue#688enryH2026-03-25 20:41Typo in openms_peak_picker
- Issue comment#585ypriverol2026-03-21 08:43The sdrf file check for 'sdrf' in the filename seems arbitrary
- Issue#280ypriverol2026-03-21 08:40Bug with msstats and quantms
- Issue#250ypriverol2026-03-21 08:40Another MSstats error
- Issue comment#250ypriverol2026-03-21 08:40Another MSstats error
- Issue#211ypriverol2026-03-21 08:39Ascore in all the Phospho datasets
- Issue comment#211ypriverol2026-03-21 08:39Ascore in all the Phospho datasets
- Issue#68ypriverol2026-03-21 08:38Add more elaborate experimental design validation
- Issue#584ypriverol2026-03-21 08:38[FEATURE] Better error message when running quantms with no input
- Issue#513ypriverol2026-03-21 08:32Conda Support
- Issue comment#513ypriverol2026-03-21 08:32Conda Support
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 25 stars here means stars gained during the window, not the repo's star count.