scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (eGRNs) from single-cell multiome data (RNA + ATAC).
active 2025-04-08 → 2026-08-14 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 494 days from 2025-04-08 to 2026-08-14. Pushes: 67 total, peak 19 in a day. Pull requests: 24 total, peak 6 in a day. Issues: 3 total, peak 1 in a day. Comments: 13 total, peak 2 in a day. Stars: 24 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| martinrohbeck | 70 | 51 | 19 | 0 |
| saraswatmanu | 24 | 16 | 4 | 2 |
| codecov-commenter | 8 | 0 | 0 | 8 |
| DmitriiSeverinov | 2 | 0 | 0 | 1 |
| sbgonenc | 1 | 0 | 0 | 1 |
| t-soehngen | 1 | 0 | 0 | 1 |
| scverse-bot | 1 | 0 | 1 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#20DmitriiSeverinov2026-03-02 16:21[Feature request] ATAC count mode for metacell construction
- Pull request#18scverse-bot2025-12-24 09:51
- Issue#17saraswatmanu2025-12-19 22:14GRN inference returns NaN scores
- Issue comment#15sbgonenc2025-12-17 11:28float-double multiplication error during phase 2 training
- Issue comment#13t-soehngen2025-10-20 07:19scDORI training from the "grn" step OOM issue
- Issue comment#15DmitriiSeverinov2025-10-07 12:37float-double multiplication error during phase 2 training
- Issue comment#14saraswatmanu2025-08-20 14:02Import Error for tangermeme.tools
- Issue#14saraswatmanu2025-08-20 14:02Import Error for tangermeme.tools
- Issue comment#12codecov-commenter2025-05-22 15:14Caching Model Computations
- Pull request#12martinrohbeck2025-05-22 15:13
- Issue comment#11codecov-commenter2025-05-17 11:08Added caching to prevent recomputing fixed matrices
- Pull request#11martinrohbeck2025-05-17 11:07
- Pull request#10martinrohbeck2025-05-12 19:48
- Issue comment#10codecov-commenter2025-05-12 19:46Fixed installation
- Pull request#10martinrohbeck2025-05-12 19:44
- Pull request#4martinrohbeck2025-05-06 21:27
- Issue comment#4codecov-commenter2025-05-06 21:21Imrovements train & downstream code
- Pull request#3martinrohbeck2025-05-06 21:17
- Pull request#9saraswatmanu2025-05-05 17:45
- Issue comment#9codecov-commenter2025-05-05 17:32added downstream analysis notebook
- Pull request#9saraswatmanu2025-05-05 17:30
- Pull request#8martinrohbeck2025-04-12 17:43
- Pull request#8martinrohbeck2025-04-12 17:42
- Pull request#7martinrohbeck2025-04-12 13:06
- Issue comment#7codecov-commenter2025-04-12 12:25Split notebooks, updated docs and readme
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 24 stars here means stars gained during the window, not the repo's star count.