An ensemble approach to accurately detect somatic mutations using SomaticSeq
active 2023-08-31 → 2026-08-16 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1082 days from 2023-08-31 to 2026-08-16. Pushes: 259 total, peak 26 in a day. Pull requests: 11 total, peak 2 in a day. Issues: 22 total, peak 3 in a day. Comments: 68 total, peak 21 in a day. Stars: 26 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| litaifang | 314 | 259 | 10 | 39 |
| ddzhang3 | 11 | 0 | 0 | 10 |
| GACGAMA | 10 | 0 | 0 | 7 |
| SAADAT-Abu | 7 | 0 | 0 | 6 |
| FrancescaLonghin | 3 | 0 | 0 | 1 |
| rebber | 2 | 0 | 0 | 1 |
| xiechangxiao | 2 | 0 | 0 | 0 |
| fredsamhaak | 2 | 0 | 0 | 1 |
| ivanmilevtues | 2 | 0 | 1 | 1 |
| karlkashofer | 2 | 0 | 0 | 1 |
| harrymatthews50 | 2 | 0 | 0 | 0 |
| zenghp365 | 2 | 0 | 0 | 1 |
| pagnasok | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Releaselitaifang2026-04-25 09:01v3.12.0
- Pull request#146litaifang2026-04-13 21:29
- Issue#145karlkashofer2026-02-10 08:33Output vcf incompatible with PureCN
- Issue comment#129karlkashofer2026-02-09 20:12Are multi-nucleotide and complex variants ignored?
- Issue comment#142litaifang2025-10-02 05:41Cannot access local variable 'ith_base'
- Issue comment#144ivanmilevtues2025-08-03 00:00High-Level Diagrams of SomaticSeq's codebase
- Pull request#144ivanmilevtues2025-06-29 00:27
- Issue comment#142litaifang2025-06-09 23:21Cannot access local variable 'ith_base'
- Issue comment#142litaifang2025-06-08 21:08Cannot access local variable 'ith_base'
- Pull request#143litaifang2025-06-08 20:15
- Issue comment#142litaifang2025-06-08 08:55Cannot access local variable 'ith_base'
- Issue#142pagnasok2025-06-02 16:33Cannot access local variable 'ith_base'
- Issue comment#141FrancescaLonghin2025-04-01 07:17Data Request
- Issue#141FrancescaLonghin2025-04-01 07:17Data Request
- Issue comment#141litaifang2025-03-31 19:23Data Request
- Issue#141FrancescaLonghin2025-03-31 12:36Data Request
- Issue comment#140litaifang2025-03-27 05:39Missing calls in the Consensus.sINDEL.vcf
- Issue#140litaifang2025-03-27 05:39Missing calls in the Consensus.sINDEL.vcf
- Issue comment#140ddzhang32025-03-25 03:42Missing calls in the Consensus.sINDEL.vcf
- Releaselitaifang2025-03-18 23:293.11.0
- Pull request#139litaifang2025-03-18 21:32
- Pull request#139litaifang2025-03-18 21:31
- Issue comment#138ddzhang32025-02-05 01:36where can I modify the docker container "/opt/somaticseq/somaticseq" to "/opt/somaticseq-3.10.0/somaticseq"
- Issue comment#138litaifang2025-01-30 22:47where can I modify the docker container "/opt/somaticseq/somaticseq" to "/opt/somaticseq-3.10.0/somaticseq"
- Issue comment#138litaifang2025-01-27 17:05where can I modify the docker container "/opt/somaticseq/somaticseq" to "/opt/somaticseq-3.10.0/somaticseq"
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 26 stars here means stars gained during the window, not the repo's star count.