Course materials for "Analysis of Bulk RNA-seq" - SBS MPhil program
active 2023-10-09 → 2026-05-14 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 949 days from 2023-10-09 to 2026-05-14. Pushes: 56 total, peak 5 in a day. Pull requests: 1 total, peak 1 in a day. Issues: 12 total, peak 5 in a day. Comments: 9 total, peak 7 in a day. Stars: 12 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| AshKernow | 36 | 22 | 0 | 7 |
| tavareshugo | 21 | 14 | 1 | 2 |
| AbbiEdwards | 13 | 12 | 0 | 0 |
| chilamakuricsreddy | 5 | 5 | 0 | 0 |
| adamjamesreid | 3 | 3 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#28tavareshugo2024-10-01 14:33
- Issue comment#20AshKernow2024-03-20 11:00timing of exploratory analysis (day 1)
- Issue comment#24AshKernow2024-03-20 10:54Add back tx2gene tsv instructions
- Issue#24AshKernow2024-03-20 10:54Add back tx2gene tsv instructions
- Issue comment#18AshKernow2024-03-20 10:53GSEA: update to mouse halmark genes
- Issue comment#11AshKernow2024-03-20 10:43Packages for annotations
- Issue comment#9AshKernow2024-03-20 10:38Clarify role of genome alignments
- Issue#9AshKernow2024-03-20 10:38Clarify role of genome alignments
- Issue comment#2AshKernow2024-03-20 10:37Improvements to new stats and linear models sessions
- Issue#2AshKernow2024-03-20 10:37Improvements to new stats and linear models sessions
- Issue comment#4AshKernow2024-03-20 10:36Shorten/improve day 3 recap slides (before DESeq2 differential analysis)
- Issue#4AshKernow2024-03-20 10:36Shorten/improve day 3 recap slides (before DESeq2 differential analysis)
- Issue#27AshKernow2024-03-20 10:33Update Salmon index
- Issue comment#18tavareshugo2024-03-19 15:48GSEA: update to mouse halmark genes
- Issue#26AshKernow2024-03-19 13:04Add patchwork to Visualisations session
- Issue#25AshKernow2024-03-19 13:02Switch to pheatmap from ComplexHeatmap
- Issue#24AbbiEdwards2023-11-17 17:52Add back tx2gene tsv instructions
- Issue#3tavareshugo2023-10-23 14:05Reducing or removing HISAT2 section
- Issue comment#22tavareshugo2023-10-23 11:04Error writing files - no results folder
- Issue#22tavareshugo2023-10-23 11:04Error writing files - no results folder
- Issue#23tavareshugo2023-10-23 11:02GSEA fixes to gene ranking and exercise 2
- Issue#12tavareshugo2023-10-23 11:02Renaming the log2fc column
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 12 stars here means stars gained during the window, not the repo's star count.