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blab/pathogen-embed

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Create reduced dimension embeddings for pathogen sequences

active 2024-06-27 → 2024-08-21 (UTC)

Partial coverage15,177 / 18,600 hourly files (82%) · 2 absent upstream · 3,422 failed, retryable2024-06-27 → 2026-08-11 (UTC)— sampled evenly across the window, so rankings and trends hold; absolute counts scale up.
Events
59
Pushes
20
Pull requests
10
Issues
8
Stars
0
Forks
0

Activity over time

Daily event counts in the loaded window

Line chart, 56 days from 2024-06-27 to 2024-08-21. Pushes: 20 total, peak 8 in a day. Pull requests: 10 total, peak 5 in a day. Issues: 8 total, peak 3 in a day. Comments: 2 total, peak 2 in a day. Stars: 0 total, peak 0 in a day.

  • Pushes
  • Pull requests
  • Issues
  • Comments
  • Stars

Top contributors

Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity

ContributorContributionsPushesPRsComments
huddlej4020102

Recent activity

Latest issues, pull requests and releases

  • Releasehuddlej2024-08-21 23:31
    3.1.0
  • Issue#20huddlej2024-08-21 23:31
    Export table of mutations per cluster in a new command
  • Issue#20huddlej2024-08-21 23:31
    Export table of mutations per cluster in a new command
  • Pull request#36huddlej2024-08-21 23:31
  • Pull request#36huddlej2024-08-21 19:12
  • Releasehuddlej2024-08-19 22:09
    3.0.0
  • Issue#34huddlej2024-08-07 21:56
    pathogen-cluster only accepts one distance matrix
  • Pull request#33huddlej2024-07-26 22:18
  • Releasehuddlej2024-07-16 20:49
    2.2.1
  • Pull request#32huddlej2024-07-15 22:59
  • Releasehuddlej2024-07-15 02:18
    2.2.0
  • Pull request#29huddlej2024-07-15 01:52
  • Issue#25huddlej2024-07-15 01:45
    Release to PyPI with GitHub Actions
  • Pull request#30huddlej2024-07-15 01:45
  • Pull request#30huddlej2024-07-15 01:20
  • Pull request#29huddlej2024-07-15 01:12
  • Issue#28huddlej2024-07-14 04:24
    Replace internal sort of alignments and distance matrices with a check for consistent record order across inputs
  • Issue comment#27huddlej2024-07-14 04:14
    Why is bioconda recipe more constrained than setup.py?
  • Issue comment#26huddlej2024-07-14 04:10
    Relax scikit-learn constraint to support all of major version 1
  • Issue#25huddlej2024-06-28 22:15
    Release to PyPI with GitHub Actions
  • Issue#24huddlej2024-06-28 22:12
    Build docs with sphinx instead of GitHub pages
  • Issue#22huddlej2024-06-28 21:52
    Test alternate encodings of sequence data for PCA inputs
  • Pull request#23huddlej2024-06-28 21:52
  • Pull request#23huddlej2024-06-27 22:27

Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 0 stars here means stars gained during the window, not the repo's star count.