Phylogenetic penalized likelihood
active 2023-11-13 → 2025-11-24 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 743 days from 2023-11-13 to 2025-11-24. Pushes: 10 total, peak 7 in a day. Pull requests: 1 total, peak 1 in a day. Issues: 15 total, peak 4 in a day. Comments: 26 total, peak 5 in a day. Stars: 12 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| josephwb | 23 | 10 | 0 | 11 |
| blackrim | 4 | 0 | 0 | 0 |
| XuWeiEvo | 4 | 0 | 0 | 2 |
| Puguang-Zhao | 3 | 0 | 0 | 2 |
| LeoEarnest | 3 | 0 | 0 | 3 |
| NiuNiuguohao | 2 | 0 | 0 | 2 |
| pbbreslin1 | 2 | 0 | 0 | 1 |
| kldxgg | 1 | 0 | 0 | 0 |
| epmcfarland | 1 | 0 | 0 | 1 |
| TiagoBelintani | 1 | 0 | 0 | 1 |
| ThibauldMichel | 1 | 0 | 0 | 0 |
| NERV-Asuka | 1 | 0 | 0 | 0 |
| evanlinde | 1 | 0 | 1 | 0 |
| hlstrived | 1 | 0 | 0 | 0 |
| bioinfowheat | 1 | 0 | 0 | 0 |
| padpadpadpad | 1 | 0 | 0 | 1 |
| PAguado-Ramsay | 1 | 0 | 0 | 1 |
| TiagoVieiraBotany | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue#73NERV-Asuka2025-11-24 14:54How to set numsites for consensus tree？
- Issue comment#69PAguado-Ramsay2025-11-15 18:17Seeking Guidance on Using treePL for Divergence Time Analysis
- Issue comment#71pbbreslin12025-05-21 17:29"tree missing concluding semicolon" error for what looks like a good tree
- Issue comment#71josephwb2025-05-21 17:07"tree missing concluding semicolon" error for what looks like a good tree
- Issue comment#71josephwb2025-05-21 16:49"tree missing concluding semicolon" error for what looks like a good tree
- Issue#71pbbreslin12025-05-21 14:49"tree missing concluding semicolon" error for what looks like a good tree
- Issue comment#70TiagoVieiraBotany2025-05-07 16:57No access to sudo on a cluster
- Issue#70ThibauldMichel2025-04-04 13:50No access to sudo on a cluster
- Issue#69hlstrived2025-04-03 03:09Seeking Guidance on Using treePL for Divergence Time Analysis
- Issue#68bioinfowheat2025-01-29 09:59treePL: error while loading shared libraries: libadolc.so.2: cannot open shared object file: No such file or directory
- Issue comment#51epmcfarland2025-01-15 21:32CV hanging
- Issue comment#63Puguang-Zhao2024-07-22 02:11Failed setting feasible start rates/dates after 10 attempts. Aborting.
- Issue#65josephwb2024-07-22 01:02The root time is biased towards the maximum time of the fossil which calibrated to the root.
- Issue comment#63josephwb2024-07-22 00:57Failed setting feasible start rates/dates after 10 attempts. Aborting.
- Issue comment#63josephwb2024-07-21 13:52Failed setting feasible start rates/dates after 10 attempts. Aborting.
- Issue comment#63josephwb2024-07-20 22:20Failed setting feasible start rates/dates after 10 attempts. Aborting.
- Issue comment#63TiagoBelintani2024-07-19 12:21Failed setting feasible start rates/dates after 10 attempts. Aborting.
- Issue#22blackrim2024-06-12 12:54how to choose the best smoothing from treePL
- Issue#21blackrim2024-06-12 12:53How drive treePL to estimate divergence time under strict global clock model?
- Issue#17blackrim2024-06-12 12:53checks for constraints
- Issue#7blackrim2024-06-12 12:53link error on ubuntu 13.10 with apt-get installed libadolc2/libadolc-dev
- Issue comment#67josephwb2024-04-01 11:58Installation issues
- Issue#67josephwb2024-04-01 11:58Installation issues
- Issue#67kldxgg2024-04-01 07:49Installation issues
- Issue#66XuWeiEvo2024-03-27 13:43Large variation among different replicates but with same parameters
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 12 stars here means stars gained during the window, not the repo's star count.