Pipeline to calculate de novo mutation rates from parent-offspring trios
active 2023-10-18 → 2025-04-29 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 560 days from 2023-10-18 to 2025-04-29. Pushes: 304 total, peak 46 in a day. Pull requests: 19 total, peak 4 in a day. Issues: 28 total, peak 7 in a day. Comments: 23 total, peak 7 in a day. Stars: 3 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| campanam | 374 | 304 | 19 | 23 |
Recent activity
Latest issues, pull requests and releases
- Pull request#83campanam2024-08-12 18:16
- Pull request#83campanam2024-08-12 18:15
- Releasecampanam2024-08-07 16:04RatesTools version 1.2.3
- Releasecampanam2024-08-07 16:03RatesTools version 1.2.2
- Issue comment#81campanam2024-05-24 15:15[BUG] Region filter bypass keeps files bgzipped, preventing ruby reading properly
- Issue#81campanam2024-05-24 15:15[BUG] Region filter bypass keeps files bgzipped, preventing ruby reading properly
- Releasecampanam2024-05-24 15:15RatesTools version 1.2.1
- Pull request#82campanam2024-05-24 15:14
- Pull request#82campanam2024-05-24 15:13
- Issue#81campanam2024-05-23 16:26[BUG] Region filter bypass keeps files bgzipped, preventing ruby reading properly
- Pull request#80campanam2024-03-19 18:44
- Pull request#80campanam2024-03-19 18:44
- Issue comment#78campanam2024-03-19 15:02[FEATURE REQUEST] Skip splitTrio when only one offspring
- Issue comment#26campanam2024-03-19 15:01Split chromosomes before joint genotyping
- Issue comment#13campanam2024-03-19 15:00Partial chromosome parallelization
- Issue#13campanam2024-03-19 15:00Partial chromosome parallelization
- Issue comment#12campanam2024-03-19 14:54Extended trios -- multiple generations
- Issue#79campanam2024-03-16 21:48[FEATURE REQUEST] Specify prefix for candidates in output 16
- Issue#78campanam2024-03-16 01:33[FEATURE REQUEST] Skiip splitTrio when only one offspring
- Issue comment#70campanam2024-03-16 01:32[FEATURE REQUEST] Estimate non-normal bootstrap confidence interval
- Issue#70campanam2024-03-16 01:32[FEATURE REQUEST] Estimate non-normal bootstrap confidence interval
- Releasecampanam2024-03-12 20:12RatesTools version 1.2.0
- Pull request#77campanam2024-03-12 20:09
- Pull request#77campanam2024-03-12 20:09
- Pull request#76campanam2024-03-12 20:07
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 3 stars here means stars gained during the window, not the repo's star count.