Heuristic SNP caller for pooled sequencing data
active 2023-10-12 → 2025-04-16 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 553 days from 2023-10-12 to 2025-04-16. Pushes: 2 total, peak 2 in a day. Pull requests: 2 total, peak 1 in a day. Issues: 9 total, peak 3 in a day. Comments: 8 total, peak 2 in a day. Stars: 2 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| capoony | 9 | 2 | 1 | 4 |
| abhilesh | 4 | 0 | 1 | 1 |
| lczech | 4 | 0 | 0 | 1 |
| evelinepinseel | 3 | 0 | 0 | 1 |
| peterthorpe5 | 1 | 0 | 0 | 1 |
| deboraycb | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#16deboraycb2025-04-16 18:04Minimum coverage parameter
- Issue#15lczech2025-02-05 20:50Unclear details of max-cov.py
- Issue#14lczech2025-02-05 20:15Malformed test.mpileup
- Issue comment#12lczech2025-02-05 17:24Error in `parallel`
- Issue#12lczech2025-02-05 17:09Error in `parallel`
- Issue comment#11capoony2024-08-10 10:08Update python scripts path
- Releasecapoony2024-08-10 10:05v.1.0.1
- Issue comment#11capoony2024-08-10 10:01Update python scripts path
- Pull request#11capoony2024-08-10 09:59
- Pull request#11abhilesh2024-08-07 11:57
- Issue comment#10abhilesh2024-07-23 10:40Create a release to be used for conda packages
- Issue#10abhilesh2024-07-23 10:40Create a release to be used for conda packages
- Releasecapoony2024-07-19 19:53First stable release v.1.0.0
- Issue comment#7capoony2024-07-19 19:51Error executing max-cov.py script
- Issue#5capoony2024-07-19 19:08Using PoolSNP to genotype non-SNP sites
- Issue comment#10capoony2024-07-19 19:07Create a release to be used for conda packages
- Issue#10abhilesh2024-07-11 19:03Create a release to be used for conda packages
- Issue#9evelinepinseel2024-02-06 18:32Minimum allele frequency notation
- Issue comment#9evelinepinseel2024-02-06 18:32Minimum allele frequency notation
- Issue#9evelinepinseel2024-02-06 16:47Minimum allele frequency notation
- Issue comment#7peterthorpe52023-10-12 13:42Error executing max-cov.py script
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 2 stars here means stars gained during the window, not the repo's star count.