Interpretation of cell states using reference single-cell maps
active 2023-08-16 → 2026-03-30 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 958 days from 2023-08-16 to 2026-03-30. Pushes: 87 total, peak 10 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 77 total, peak 5 in a day. Comments: 120 total, peak 5 in a day. Stars: 107 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| mass-a | 156 | 76 | 0 | 56 |
| JGarnica22 | 11 | 9 | 0 | 1 |
| gianfilippo | 8 | 0 | 0 | 6 |
| apal6 | 8 | 0 | 0 | 5 |
| andynkili | 7 | 0 | 0 | 3 |
| itamuria | 7 | 0 | 0 | 2 |
| rana228 | 6 | 0 | 0 | 5 |
| yls2g13 | 6 | 0 | 0 | 6 |
| NoemieL | 5 | 0 | 0 | 3 |
| danli349 | 5 | 0 | 0 | 3 |
| florekem | 5 | 0 | 0 | 4 |
| mckoch234 | 4 | 0 | 0 | 1 |
| reyeshdezosuna | 4 | 0 | 0 | 3 |
| wsullivan22 | 3 | 0 | 0 | 2 |
| ElviMagda | 3 | 0 | 0 | 1 |
| france-hub | 3 | 0 | 0 | 1 |
| whuangbinfo | 3 | 0 | 0 | 1 |
| zhangchuy | 3 | 0 | 0 | 1 |
| ycl6 | 3 | 0 | 0 | 1 |
| edridgedsouza | 3 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Releasemass-a2025-12-19 14:05ProjecTILs v3.7.0
- Issue comment#103mass-a2025-12-19 08:31Which preprocessing required/suggested?
- Issue comment#104mass-a2025-12-19 07:33Contour plots not displayed with ggplot 4.0.1
- Issue comment#105LeoColmet-Daage2025-12-16 22:58Warning about not finding the counts layer and using "slot" instead of "layer"
- Issue#59mass-a2025-12-12 15:06speed up multiple projections by storing uncorrected PCA embeddings of ref
- Issue#85mass-a2025-12-12 15:03no slot of name "var.features" for this object of class "Assay5"
- Issue comment#99nandini09102025-11-28 23:51plot.states.radar plotting error with ggplot2 >= 3.5.0
- Issue comment#23ruqianl2025-08-30 05:38Reference atlases with counts data
- Issue comment#23ruqianl2025-08-19 02:36Reference atlases with counts data
- Issue#103halterc2025-07-30 09:24Which preprocessing required/suggested?
- Issue comment#102shwong-tw2025-07-22 00:53Projection to custom reference atlas
- Issue#102shwong-tw2025-07-21 02:00Projection to custom reference atlas
- Issue comment#101andynkili2025-05-19 18:19Run.ProjecTILs' split.by implies a single seurat object as query
- Issue#101andynkili2025-05-19 18:19Run.ProjecTILs' split.by implies a single seurat object as query
- Issue comment#101mass-a2025-05-19 14:09Run.ProjecTILs' split.by implies a single seurat object as query
- Issue#101andynkili2025-05-15 16:27Run.ProjecTILs' split.by implies a seurat object as query
- Issue#93mass-a2025-05-14 16:06Error: Counts slot not found in your Seurat object
- Issue#87mass-a2025-05-14 16:06projection plot and recalculated embeddings do not seem quite aligned
- Issue#84mass-a2025-05-14 16:04Radar doesn't show signatures
- Issue comment#100mass-a2025-05-12 15:31Tutorial for building a custom atlas does not run
- Issue comment#98mass-a2025-04-24 12:173D umap projection
- Issue#99Shiywa2025-04-20 07:30plot.states.radar plotting error with ggplot2 >= 3.5.0
- Issue comment#96andynkili2025-04-03 15:20Multi-reference
- Issue#96andynkili2025-04-03 15:20Multi-reference
- Issue comment#97danli3492025-03-18 22:08How can I save the values of `plot.statepred.composition` to a `csv` file?
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 107 stars here means stars gained during the window, not the repo's star count.