QDNAseq package for Bioconductor (fork to enable retaining chrM/MT)
active 2023-09-22 → 2026-01-28 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 860 days from 2023-09-22 to 2026-01-28. Pushes: 10 total, peak 4 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 14 total, peak 3 in a day. Comments: 16 total, peak 3 in a day. Stars: 6 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| HenrikBengtsson | 21 | 10 | 0 | 5 |
| Urja25 | 2 | 0 | 0 | 1 |
| liuyangzzu | 2 | 0 | 0 | 1 |
| kojimak324 | 2 | 0 | 0 | 0 |
| fatherledo | 2 | 0 | 0 | 2 |
| helaersr | 1 | 0 | 0 | 1 |
| SQ-Gao | 1 | 0 | 0 | 1 |
| tashaann | 1 | 0 | 0 | 0 |
| zetamui | 1 | 0 | 0 | 0 |
| cjw85 | 1 | 0 | 0 | 0 |
| minw2828 | 1 | 0 | 0 | 0 |
| nickhsmith | 1 | 0 | 0 | 1 |
| jihen-lau | 1 | 0 | 0 | 1 |
| ilarischeinin | 1 | 0 | 0 | 1 |
| marromesc | 1 | 0 | 0 | 1 |
| aliahhawari | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#136fatherledo2025-09-05 02:03(::) Id
- Issue comment#136fatherledo2025-09-04 03:11(::) Id
- Issue#136HenrikBengtsson2025-09-02 16:14(::) Id
- Issue#135minw28282025-07-27 08:51no rows to aggregate no rows to aggregate Calls
- Issue comment#114nickhsmith2025-06-13 18:38exportBins to seg/vcf doesn't contain all calls
- Issue comment#114helaersr2025-06-06 07:48exportBins to seg/vcf doesn't contain all calls
- Issue comment#134jihen-lau2025-04-08 03:46Issue with QDNAseq Segmentation Output Formatting
- Issue comment#59liuyangzzu2024-09-22 17:16QDNAseq.hg38: Bin annotation for hg38?
- Issue#129HenrikBengtsson2024-07-26 11:13Next release
- Issue comment#113HenrikBengtsson2024-07-24 21:09exportBins
- Issue#113HenrikBengtsson2024-07-24 21:09exportBins
- Issue comment#120HenrikBengtsson2024-07-24 20:05END INFO sub-field not documented in VCF Header
- Issue#120HenrikBengtsson2024-07-24 20:05END INFO sub-field not documented in VCF Header
- Issue comment#112HenrikBengtsson2024-07-24 20:04error with poolRuns
- Issue#112HenrikBengtsson2024-07-24 20:04error with poolRuns
- Issue comment#104marromesc2024-07-04 10:49Running QDNAseq on WES data
- Issue comment#123HenrikBengtsson2024-05-14 05:58R CMD check: Sporadic test errors; Error in diff2(x, differences = diff) : names() applied to a non-vector
- Issue comment#123SQ-Gao2024-05-14 05:43R CMD check: Sporadic test errors; Error in diff2(x, differences = diff) : names() applied to a non-vector
- Issue#126tashaann2024-05-08 04:15Genome for mm39
- Issue#125liuyangzzu2024-05-02 02:23T2T genome support
- Issue#123HenrikBengtsson2024-02-14 02:47R CMD check: Sporadic test errors; Error in diff2(x, differences = diff) : names() applied to a non-vector
- Issue#122zetamui2024-02-02 02:52Is there a way to hack QDNAseq plot methods to plot a point on the log2 ratio plots?
- Issue comment#120HenrikBengtsson2024-01-04 22:35END INFO sub-field not documented in VCF Header
- Issue#120cjw852024-01-04 17:51END INFO sub-field not documented in VCF Header
- Issue#119kojimak3242023-11-24 06:24Marmoset bin annotation creation challenge
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 6 stars here means stars gained during the window, not the repo's star count.