An R package to visualize chromosome scale repeat patterns and predict centromere locations.
active 2023-12-30 → 2026-05-08 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 861 days from 2023-12-30 to 2026-05-08. Pushes: 187 total, peak 21 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 25 total, peak 2 in a day. Comments: 34 total, peak 5 in a day. Stars: 39 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| celphin | 218 | 187 | 0 | 23 |
| ransenyu | 6 | 0 | 0 | 3 |
| V-JJ | 5 | 0 | 0 | 2 |
| JChenGatersleben | 4 | 0 | 0 | 2 |
| frwjo | 2 | 0 | 0 | 1 |
| smile4life | 2 | 0 | 0 | 1 |
| bennuru | 1 | 0 | 0 | 0 |
| sjfleck | 1 | 0 | 0 | 0 |
| rotifergirl | 1 | 0 | 0 | 0 |
| DiegoDolgetta | 1 | 0 | 0 | 0 |
| Jokendo-collab | 1 | 0 | 0 | 0 |
| lpettrich | 1 | 0 | 0 | 0 |
| Allinonelearning | 1 | 0 | 0 | 1 |
| jonnyPizza | 1 | 0 | 0 | 1 |
| Ljs1849351839 | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#17celphin2025-07-15 02:10Error in program operation
- Issue comment#12celphin2025-07-15 00:59Atypical holocentromeres as in C. elegans
- Issue comment#15celphin2025-07-15 00:11"cannot create directory" and "no such file or directory" errors
- Issue comment#17Allinonelearning2025-07-14 03:38Error in program operation
- Issue#17Ljs18493518392025-07-03 11:27Error in program operation
- Issue comment#12V-JJ2025-04-30 10:35Atypical holocentromeres as in C. elegans
- Issue comment#12jonnyPizza2025-04-29 16:39Atypical holocentromeres as in C. elegans
- Issue#15sjfleck2025-04-02 16:53"cannot create directory" and "no such file or directory" errors
- Issue comment#13V-JJ2025-03-21 09:13Optimization to run locally with huge genome?
- Issue#13V-JJ2025-03-21 09:13Optimization to run locally with huge genome?
- Issue#13V-JJ2025-03-14 15:12Optimization to run locally with huge genome?
- Issue#12V-JJ2025-02-11 07:20Atypical holocentromeres as in C. elegans
- Issue#10celphin2025-01-31 22:28Spectra
- Issue comment#10celphin2024-11-12 20:06Spectra
- Issue#10DiegoDolgetta2024-11-10 15:12Spectra
- Issue#8celphin2024-10-07 23:18Small typo in post-repeats.sh when creating Centromere_summary_Shannon.txt and question to output files
- Issue#9celphin2024-10-07 23:18Summary figures do not contain the largest chromosomes
- Issue comment#9celphin2024-08-26 22:44Summary figures do not contain the largest chromosomes
- Issue comment#9smile4life2024-08-26 20:16Summary figures do not contain the largest chromosomes
- Issue comment#8celphin2024-08-24 04:27Small typo in post-repeats.sh when creating Centromere_summary_Shannon.txt and question to output files
- Issue comment#8celphin2024-08-24 04:24Small typo in post-repeats.sh when creating Centromere_summary_Shannon.txt and question to output files
- Issue comment#9celphin2024-08-24 04:15Summary figures do not contain the largest chromosomes
- Issue#9smile4life2024-08-21 21:06Summary figures do not contain the largest chromosomes
- Issue#6celphin2024-07-17 07:07about H0-AT_Centromere_histograms_summary.txt
- Issue#7celphin2024-07-17 07:07Understanding y-axis of the heatmap plots
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 39 stars here means stars gained during the window, not the repo's star count.