Read-pair simulation of 3C-based sequencing methodologies (HiC, Meta3C, DNase-HiC)
active 2024-01-16 → 2025-03-17 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 427 days from 2024-01-16 to 2025-03-17. Pushes: 25 total, peak 5 in a day. Pull requests: 14 total, peak 4 in a day. Issues: 24 total, peak 11 in a day. Comments: 16 total, peak 10 in a day. Stars: 3 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| cerebis | 70 | 25 | 13 | 11 |
| HMPNK | 2 | 0 | 0 | 2 |
| dependabot[bot] | 2 | 0 | 0 | 2 |
| xujialupaoli | 2 | 0 | 0 | 0 |
| ivargr | 1 | 0 | 0 | 1 |
| pacocp | 1 | 0 | 1 | 0 |
| Yichen-HNU | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#43HMPNK2025-01-10 23:37A bug and a runtime error.
- Issue comment#43HMPNK2025-01-10 22:12A bug and a runtime error.
- Issue#43Yichen-HNU2024-11-08 12:42A bug and a runtime error.
- Pull request#42pacocp2024-07-10 17:47
- Issue#41xujialupaoli2024-06-27 03:45How to use sim3C to generate hic simulation data of different lengths according to the restriction site?
- Issue#40xujialupaoli2024-06-23 04:35What does readID represent in the output simulation data?
- Issue#35cerebis2024-02-06 03:02Expand readme to discuss newest additions
- Pull request#24cerebis2024-02-06 00:48
- Issue#38cerebis2024-02-05 23:11Protocols employing dual-enzyme digests are not supported
- Issue#38cerebis2024-02-05 23:06Protocols employing dual-enzyme digests are not supported
- Issue comment#24cerebis2024-02-01 03:37bugfix & add new functions (bridge adapter, sam output)
- Pull request#24cerebis2024-02-01 03:37
- Pull request#24cerebis2024-02-01 03:36
- Pull request#37cerebis2024-01-31 11:36
- Pull request#37cerebis2024-01-31 11:32
- Pull request#36cerebis2024-01-30 04:27
- Pull request#36cerebis2024-01-30 04:27
- Pull request#34cerebis2024-01-30 04:19
- Issue#35cerebis2024-01-30 04:18Expand readme to discuss newest additions
- Pull request#34cerebis2024-01-30 04:00
- Issue comment#27cerebis2024-01-30 03:57Annotations for community definitions
- Issue#33cerebis2024-01-30 03:56Replicon names are required to be unique across the entire community.
- Issue comment#30cerebis2024-01-30 03:55Community profile format is cumbersome
- Issue#33cerebis2024-01-26 14:20Replicon names are required to be unique across the entire community.
- Issue#29cerebis2024-01-26 14:03Fragmented replicons do not incur CIS interactions at the proper rate
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 3 stars here means stars gained during the window, not the repo's star count.