Incubator for useful bioinformatics code, primarily in Python and R
active 2023-09-05 → 2025-11-26 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 814 days from 2023-09-05 to 2025-11-26. Pushes: 5 total, peak 4 in a day. Pull requests: 8 total, peak 2 in a day. Issues: 8 total, peak 4 in a day. Comments: 16 total, peak 7 in a day. Stars: 59 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| victorlin | 14 | 0 | 1 | 7 |
| chapmanb | 9 | 4 | 2 | 3 |
| roryk | 3 | 1 | 1 | 1 |
| fubar2 | 2 | 0 | 1 | 1 |
| emollier | 2 | 0 | 2 | 0 |
| wumuyao1996 | 2 | 0 | 0 | 2 |
| corneliusroemer | 2 | 0 | 0 | 2 |
| DavyCats | 1 | 0 | 0 | 0 |
| percyfal | 1 | 0 | 0 | 0 |
| phaverty-ginkgo | 1 | 0 | 1 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#147roryk2025-02-05 14:20fix: Suppress warning about invalid escape sequence
- Pull request#147roryk2025-02-05 14:20
- Pull request#147phaverty-ginkgo2025-02-04 23:42
- Pull request#146emollier2024-11-05 21:58
- Pull request#145emollier2024-11-05 21:37
- Issue#144percyfal2024-03-28 11:07GFF.parse modifies input order of base_dict
- Issue#130DavyCats2024-03-01 13:37Any chance a new release will be made sometime soon?
- Issue comment#139victorlin2024-01-30 18:09Address Biopython deprecations
- Issue comment#140corneliusroemer2024-01-30 11:05Importing BCBio.GFF suppresses Biopython warnings in external code
- Issue comment#141fubar22024-01-29 22:04updates for biopython 1.82
- Issue comment#139wumuyao19962024-01-29 20:24Address Biopython deprecations
- Issue#143victorlin2024-01-29 19:48Warning in GFFParser: BiopythonDeprecationWarning: UnknownSeq(length) is deprecated; please use Seq(None, length) instead.
- Issue comment#138victorlin2024-01-29 19:24Error in GFFParser: TypeError: SeqFeature.__init__() got an unexpected keyword argument 'strand'
- Issue#138victorlin2024-01-29 19:24Error in GFFParser: TypeError: SeqFeature.__init__() got an unexpected keyword argument 'strand'
- Issue comment#140victorlin2024-01-29 19:22Importing BCBio.GFF suppresses Biopython warnings in external code
- Issue#140victorlin2024-01-29 19:22Importing BCBio.GFF suppresses Biopython warnings in external code
- Issue#142victorlin2024-01-29 19:13Error in GFFParser: AttributeError: module 'Bio.SeqFeature' has no attribute 'SimpleLocation'
- Issue comment#139chapmanb2024-01-29 14:07Address Biopython deprecations
- Issue comment#141chapmanb2024-01-29 13:24updates for biopython 1.82
- Pull request#141chapmanb2024-01-29 13:23
- Issue comment#135chapmanb2024-01-29 13:22docs: Fix a few typos
- Pull request#135chapmanb2024-01-29 13:21
- Issue comment#139victorlin2024-01-26 01:46Address Biopython deprecations
- Issue comment#139victorlin2024-01-25 23:29Address Biopython deprecations
- Issue comment#139wumuyao19962024-01-25 22:25Address Biopython deprecations
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 59 stars here means stars gained during the window, not the repo's star count.