Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
active 2025-04-13 → 2026-07-15 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 459 days from 2025-04-13 to 2026-07-15. Pushes: 0 total, peak 0 in a day. Pull requests: 3 total, peak 1 in a day. Issues: 57 total, peak 2 in a day. Comments: 93 total, peak 10 in a day. Stars: 83 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| chhylp123 | 28 | 0 | 0 | 28 |
| HaxyMoly | 8 | 0 | 0 | 6 |
| yajing-wu | 6 | 0 | 0 | 4 |
| zhidaobuzhidao | 6 | 0 | 0 | 3 |
| xiagjt | 4 | 0 | 0 | 3 |
| Jokendo-collab | 4 | 0 | 0 | 2 |
| tnn111 | 3 | 0 | 0 | 2 |
| shehongbing | 3 | 0 | 0 | 1 |
| jiaowu123 | 3 | 0 | 0 | 1 |
| chenHuiRu8 | 3 | 0 | 0 | 2 |
| hazmup | 3 | 0 | 0 | 2 |
| nickgladman | 3 | 0 | 0 | 2 |
| jetrz | 2 | 0 | 0 | 1 |
| tingting123456257 | 2 | 0 | 0 | 0 |
| Yunxiao-web | 2 | 0 | 0 | 2 |
| faulk-lab | 2 | 0 | 0 | 2 |
| alexzaccaron | 2 | 0 | 0 | 0 |
| caspargross | 2 | 0 | 0 | 1 |
| aabaricalla | 2 | 0 | 0 | 2 |
| bilibilij | 2 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue#922RickZ422026-05-12 03:15Advice on highly imbalanced haplotypes in a large repeat-rich genome assembly
- Issue#917Tong-yx2026-04-22 02:52Very long gaps (150 kb and 400 kb) in haplotigs after assembly with --ont using ONT + Hi‑C reads
- Issue#915conjon422026-03-28 11:52Documentation update
- Issue comment#567ythuang4982026-03-11 10:48Assertion `((*q0l) == (*q1l)) && ((*t0l) == (*t1l)) && (err0 == err1)' failed
- Issue#906alexzaccaron2026-03-04 16:49Segmentation fault during assembly of corrected PacBio reads
- Issue comment#901hungweichen03272026-03-04 07:18Nature paper
- Issue#907hungweichen03272026-03-03 11:43Inconsistent haplotype assemblies with increasing coverage in a selfing diploid genome
- Issue comment#793artorias1112026-03-02 17:15Abnormal kmer distribution, ERROR-purge, and haplotig size imbalance during plant genome assembly
- Issue comment#906alexisbourdais2026-02-27 11:44Segmentation fault during assembly of corrected PacBio reads
- Issue#906alexzaccaron2026-02-23 22:57Segmentation fault during assembly of corrected PacBio reads
- Issue comment#904bernardo19632026-02-19 10:03Frequent hifiasm misassemblies in Drosophila
- Issue#904bernardo19632026-02-17 18:54Frequent hifiasm misassemblies in Drosophila
- Pull request#902Malfoy2026-02-13 08:29
- Issue#901zhidaobuzhidao2026-02-05 02:34Nature paper
- Issue comment#721shameem3562026-01-15 07:41Illegal instruction (core dumped)
- Issue comment#851okendojo2025-12-24 16:45Tangle resolution and Gap patching after running hifiasm
- Issue comment#851zxzhang82025-12-24 02:32Tangle resolution and Gap patching after running hifiasm
- Issue comment#851okendojo2025-12-23 15:17Tangle resolution and Gap patching after running hifiasm
- Issue#898eead-csic-compbio2025-12-19 15:05Trouble with k-mer profile on large, heterozygous species
- Issue comment#864zhidaobuzhidao2025-12-11 01:29Highly heterozygous genome assembly with twice the size
- Issue comment#864natalie-wa2025-12-11 01:22Highly heterozygous genome assembly with twice the size
- Issue#897dcopetti2025-12-09 00:46getting more than two haplotypes with --n-hap
- Issue#825caspargross2025-11-23 19:06ERROR: wrong file magic
- Issue comment#892chughes-g2025-11-20 15:47Excessively high Missing on BUSCO
- Issue comment#804Micket2025-11-06 15:57Builld failure with version 0.25 under archlinux
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 83 stars here means stars gained during the window, not the repo's star count.