A tutorial on how to run basic polygenic risk score analysis
active 2023-08-29 → 2026-01-15 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 871 days from 2023-08-29 to 2026-01-15. Pushes: 0 total, peak 0 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 10 total, peak 6 in a day. Comments: 8 total, peak 3 in a day. Stars: 20 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| choishingwan | 11 | 0 | 0 | 5 |
| yu-zhang-oYo | 3 | 0 | 0 | 3 |
| knutj | 1 | 0 | 0 | 0 |
| ptranvan | 1 | 0 | 0 | 0 |
| SamueleSoraggi | 1 | 0 | 0 | 0 |
| SoumenMaity922 | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#50choishingwan2025-12-04 16:15LDpred 2 issue.
- Issue#28choishingwan2025-12-04 16:13#mismatching-snps
- Issue#27choishingwan2025-12-04 16:12Not able to reproduce the best fit PRS for plink
- Issue#13choishingwan2025-12-04 16:12plink parameters for generating PRS
- Issue comment#57choishingwan2025-12-04 16:08does LD calculated from target sample cause problem?
- Issue#58choishingwan2025-12-04 16:05thanks and a question about data
- Issue#59choishingwan2025-12-04 12:33Need Repo access for PRS Development
- Issue comment#59choishingwan2025-12-04 12:33Need Repo access for PRS Development
- Issue#58SamueleSoraggi2025-07-03 15:35thanks and a question about data
- Issue#56knutj2025-02-01 07:13I have followed your tutorial, but I noticed that it is missing instructions on how to create chromosome-separated BED files. Could you please update the guide to include this information? Thank you!
- Issue comment#48yu-zhang-oYo2025-01-26 17:32Look into PRS components of each individual sample in PLINK --score?
- Issue comment#48choishingwan2025-01-26 17:24Look into PRS components of each individual sample in PLINK --score?
- Issue comment#48yu-zhang-oYo2025-01-26 17:08Look into PRS components of each individual sample in PLINK --score?
- Issue comment#48choishingwan2025-01-25 21:22Look into PRS components of each individual sample in PLINK --score?
- Issue comment#48yu-zhang-oYo2025-01-25 18:21Look into PRS components of each individual sample in PLINK --score?
- Issue comment#55choishingwan2024-07-27 01:59Threshold and phenotypic variation values expectation from PRSice are wrong in the tutorial
- Issue#53ptranvan2023-10-12 09:29Confusion about pruning and clumping
- Issue#52SoumenMaity9222023-09-20 07:01Not getting any plot
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 20 stars here means stars gained during the window, not the repo's star count.