A Python alternative to `clustree` for assessing single-cell RNA-sequencing clusters.
active 2024-09-16 → 2026-03-11 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 542 days from 2024-09-16 to 2026-03-11. Pushes: 34 total, peak 8 in a day. Pull requests: 3 total, peak 1 in a day. Issues: 3 total, peak 2 in a day. Comments: 14 total, peak 4 in a day. Stars: 9 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| maltekuehl | 36 | 22 | 1 | 8 |
| harryhaller001 | 19 | 12 | 2 | 3 |
| Copilot | 3 | 0 | 0 | 3 |
| shihsama | 1 | 0 | 0 | 0 |
| Zeh-Joe | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#4harryhaller0012026-02-22 21:13
- Issue comment#2maltekuehl2025-06-08 21:20Error with score_clustering in clustree() despite installing the latest version
- Issue#2maltekuehl2025-06-08 21:20Error with score_clustering in clustree() despite installing the latest version
- Issue comment#3maltekuehl2025-06-08 11:56Layer order breaks for ≥ 10 resolutions in clustree() (v 0.4.0+) – 0.1 layer appears last
- Issue#3shihsama2025-06-08 11:48Layer order breaks for ≥ 10 resolutions in clustree() (v 0.4.0+) – 0.1 layer appears last
- Issue#2Zeh-Joe2025-04-22 13:28Error with score_clustering in clustree() despite installing the latest version
- Releasemaltekuehl2025-04-11 13:53pyclustree 0.4.0
- Pull request#1maltekuehl2024-11-18 15:44
- Pull request#1harryhaller0012024-11-02 18:28
- Releasemaltekuehl2024-10-24 18:02pyclustree 0.3.2
- Releasemaltekuehl2024-10-24 14:31pyclustree 0.3.1
- Releasemaltekuehl2024-09-30 11:45pyclustree 0.3.0
- Releasemaltekuehl2024-09-16 23:12pyclustree 0.2.2
- Releasemaltekuehl2024-09-16 23:07pyclustree 0.2.1
- Releasemaltekuehl2024-09-16 13:41pyclustree 0.2.0
- Releasemaltekuehl2024-09-16 13:39pyclustree 0.2.0
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 9 stars here means stars gained during the window, not the repo's star count.