Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
active 2023-09-17 → 2025-09-09 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 724 days from 2023-09-17 to 2025-09-09. Pushes: 4 total, peak 1 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 13 total, peak 1 in a day. Comments: 28 total, peak 4 in a day. Stars: 12 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| eileen-xue | 13 | 3 | 0 | 10 |
| EduEyras | 5 | 1 | 0 | 4 |
| dvirdi01 | 4 | 0 | 0 | 2 |
| HeLi-80 | 3 | 0 | 0 | 3 |
| lpryszcz | 2 | 0 | 0 | 2 |
| srisarya | 2 | 0 | 0 | 1 |
| improudofmyself | 2 | 0 | 0 | 2 |
| fishpm-anu | 2 | 0 | 0 | 1 |
| chriswyatt1 | 2 | 0 | 0 | 1 |
| tann5er | 1 | 0 | 0 | 0 |
| ddrazoh | 1 | 0 | 0 | 0 |
| ananzen | 1 | 0 | 0 | 0 |
| Malabady | 1 | 0 | 0 | 0 |
| mjudd8 | 1 | 0 | 0 | 0 |
| patrickaoude | 1 | 0 | 0 | 0 |
| seeronline | 1 | 0 | 0 | 1 |
| odanobu1582 | 1 | 0 | 0 | 1 |
| sheevivian | 1 | 0 | 0 | 0 |
| officialnaturalist | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#62Malabady2025-09-09 21:29no output foler
- Issue#61tann5er2025-08-30 08:38Is there a way to resume after walltime runs out?
- Issue comment#59srisarya2025-04-03 08:45Installation GCC version + segfaults
- Issue comment#60chriswyatt12025-02-12 21:25Dockerfile or recipe available
- Issue#60chriswyatt12025-02-12 20:55Dockerfile or recipe available
- Issue comment#59EduEyras2024-11-02 12:34Installation GCC version + segfaults
- Issue#59srisarya2024-10-28 18:43Installation GCC version + segfaults
- Issue#57ananzen2024-09-05 07:00will future version include more CPUs, including apple-m1?
- Issue comment#56fishpm-anu2024-08-26 07:47how to compile statically linked?
- Issue comment#56seeronline2024-08-26 07:44how to compile statically linked?
- Issue#56fishpm-anu2024-08-26 07:44how to compile statically linked?
- Issue comment#55EduEyras2024-08-23 11:55Failed cluster extraction on the server
- Issue#55officialnaturalist2024-08-23 01:45Failed cluster extraction on the server
- Issue comment#54EduEyras2024-08-12 01:06Using intermediate output for RNA-Bloom2 transcriptome assembly?
- Issue#54patrickaoude2024-08-07 14:47Using intermediate output for RNA-Bloom2 transcriptome assembly?
- Issue comment#26improudofmyself2024-05-22 00:19Segmentation fault (core dumped)
- Issue comment#26improudofmyself2024-05-22 00:18Segmentation fault (core dumped)
- Issue#53ddrazoh2024-05-16 08:10Visualisation of cluster.out
- Issue comment#52EduEyras2024-03-02 09:53Losing clusters during correction stage
- Issue#52mjudd82024-02-29 19:58Losing clusters during correction stage
- Issue comment#16odanobu15822024-01-26 02:35Cannot call ./rattle
- Issue comment#51eileen-xue2024-01-03 01:23How can I cluster multiple Nanopore sequencing data together?
- Issue comment#40eileen-xue2024-01-03 00:20ERROR when installing RATTLE
- Issue#51sheevivian2023-12-29 18:53How can I cluster multiple Nanopore sequencing data together?
- Issue comment#40HeLi-802023-12-21 09:16ERROR when installing RATTLE
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 12 stars here means stars gained during the window, not the repo's star count.