SUPPA: Fast quantification of splicing and differential splicing
active 2023-08-16 → 2026-05-20 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1009 days from 2023-08-16 to 2026-05-20. Pushes: 4 total, peak 3 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 88 total, peak 11 in a day. Comments: 146 total, peak 7 in a day. Stars: 83 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| EduEyras | 108 | 4 | 0 | 74 |
| Tang-pro | 7 | 0 | 0 | 4 |
| igonzalsbmc | 7 | 0 | 0 | 4 |
| ArnavBharti | 7 | 0 | 0 | 4 |
| gengbaobao | 5 | 0 | 0 | 3 |
| happypiggyzjx | 5 | 0 | 0 | 1 |
| maronem | 5 | 0 | 0 | 3 |
| gnilihzeux | 5 | 0 | 0 | 4 |
| Renee-SU | 4 | 0 | 0 | 1 |
| sarahhp | 4 | 0 | 0 | 4 |
| BourbonZhang | 4 | 0 | 0 | 2 |
| liuyh99 | 4 | 0 | 0 | 3 |
| ryanpe13002 | 3 | 0 | 0 | 2 |
| MarekGierlinski | 3 | 0 | 0 | 3 |
| stevenjbark | 3 | 0 | 0 | 1 |
| XXuxi | 3 | 0 | 0 | 0 |
| jiehuichen | 3 | 0 | 0 | 2 |
| xiao-bai66 | 2 | 0 | 0 | 2 |
| fafuyyk | 2 | 0 | 0 | 0 |
| YIGUIz | 2 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#222ExctOcean2026-04-18 08:37SUPPA2 on single cell data generated on 10x and Pacbio platform
- Issue#221bluemood20112026-02-02 08:54Segmentation fault in clusterEvents
- Issue comment#203kbseah2025-11-25 01:31New release on PyPI and bioconda?
- Issue comment#216chenchen-eng2025-09-06 03:49psiPerEvent, input error
- Issue comment#218chenchen-eng2025-09-06 03:49Error in psiPerEvent: "Unexpected number of fields. 6 expected, 5 given"
- Issue#220Mvirale2025-07-08 16:37SUPPA2 clustering analysis on diffSPlicing with nan value
- Issue#217wangduo-ux2025-06-20 02:31Do I need to merge all ioe files?
- Issue#216yinfeitan2025-06-19 21:30psiPerEvent, input error
- Issue comment#211EduEyras2025-05-30 04:13Psi Not Calculated for Event Error: Similar to Issue #201
- Issue comment#211naazkhan2025-05-29 13:50Psi Not Calculated for Event Error: Similar to Issue #201
- Issue comment#215EduEyras2025-05-27 14:16Identifying AS events per isoform after diffSplice in SUPPA2
- Issue comment#211EduEyras2025-05-26 13:39Psi Not Calculated for Event Error: Similar to Issue #201
- Issue comment#213EduEyras2025-05-25 13:20IndexError when running diffSplice
- Issue#214xyz2023102025-05-23 06:16What is the corresponding caculation formula for TPM? And could SUPPA be used in long-read RNA-seq?
- Issue comment#211naazkhan2025-05-14 16:11Psi Not Calculated for Event Error: Similar to Issue #201
- Issue#213ipatop2025-05-10 15:27IndexError when running diffSplice
- Issue#212KSLiu982025-05-07 21:110 or 1-based coordinates
- Issue comment#2EduEyras2025-04-20 00:29Differential isoform usage
- Issue comment#2Grace12062025-04-17 03:31Differential isoform usage
- Issue comment#207EduEyras2025-04-16 11:39What to do with ioe files with multiple samples?
- Issue comment#207EduEyras2025-04-16 11:37What to do with ioe files with multiple samples?
- Issue comment#195EduEyras2025-04-16 11:34suppa version issue
- Issue comment#201EduEyras2025-04-16 11:26ERROR:psiCalculator:PSI not calculated for event
- Issue#201EduEyras2025-04-16 11:26ERROR:psiCalculator:PSI not calculated for event
- Issue comment#211EduEyras2025-04-16 11:22Psi Not Calculated for Event Error: Similar to Issue #201
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 83 stars here means stars gained during the window, not the repo's star count.