Segment Anything for Microscopy, finetuning for specific data
Jupyter Notebook · active 2023-08-15 → 2026-08-14 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1096 days from 2023-08-15 to 2026-08-14. Pushes: 2,449 total, peak 136 in a day. Pull requests: 1,208 total, peak 17 in a day. Issues: 545 total, peak 20 in a day. Comments: 2,285 total, peak 35 in a day. Stars: 465 total, peak 24 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| constantinpape | 3.4K | 1.1K | 652 | 932 |
| anwai98 | 2.8K | 1.3K | 472 | 736 |
| GenevieveBuckley | 285 | 5 | 27 | 176 |
| lufre1 | 185 | 94 | 22 | 39 |
| caroteu | 77 | 11 | 17 | 27 |
| aloboa | 54 | 0 | 0 | 44 |
| psobolewskiPhD | 33 | 0 | 2 | 26 |
| hmaarrfk | 29 | 0 | 1 | 20 |
| QY6616 | 28 | 0 | 0 | 18 |
| review-notebook-app[bot] | 26 | 0 | 0 | 26 |
| Nal44 | 22 | 0 | 0 | 18 |
| rodrigo-pena | 18 | 0 | 0 | 17 |
| codecov[bot] | 18 | 0 | 0 | 18 |
| paulhfu | 13 | 10 | 1 | 2 |
| haesleinhuepf | 11 | 0 | 1 | 6 |
| jazberna1 | 10 | 0 | 0 | 4 |
| DavidMed13 | 9 | 0 | 0 | 9 |
| martinschorb | 8 | 0 | 0 | 7 |
| agustleoa | 7 | 0 | 0 | 5 |
| maartenpaul | 7 | 0 | 0 | 4 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#1328ovalerio2026-08-13 21:43Bump version to 1.8.9 and pin napari<0.9
- Issue comment#1325mdiephuis2026-08-13 19:32Nitpick: explicitly set unetr to train and eval for correct batchnorm behaviour.
- Pull request#1246anwai982026-06-21 23:59
- Pull request#1237anwai982026-06-17 15:38
- Pull request#1231constantinpape2026-06-10 11:28
- Issue#613constantinpape2026-06-04 21:08Switch PyPI deploy method to use trusted publisher
- Issue#1210cs1239512026-05-18 03:35nifty module not found
- Pull request#1207anwai982026-05-13 15:09
- Issue comment#1207anwai982026-05-13 12:31Fix predictor adapter load state dict to accept keyword arguments
- Issue comment#865anwai982026-05-13 08:12Support for .mrc files
- Pull request#1204anwai982026-05-10 19:02
- Pull request#1204anwai982026-05-10 19:02
- Issue comment#1190ovalerio2026-05-04 03:49Question regarding negative prompts.
- Issue comment#1190ovalerio2026-04-28 23:48Question regarding negative prompts.
- Issue comment#1194codecov[bot]2026-04-23 16:40Fix image loading and saving logic in image_series_annotator
- Issue#1190ovalerio2026-04-20 06:59Question regarding negative prompts.
- Pull request#1188anwai982026-04-08 08:11
- Issue comment#1176constantinpape2026-03-11 12:05RGB images prediction supported by napari plugin?
- Pull request#1175constantinpape2026-02-27 08:51
- Pull request#1172constantinpape2026-02-24 15:27
- Pull request#1170constantinpape2026-02-23 19:20
- Pull request#1170constantinpape2026-02-18 19:45
- Issue comment#1168constantinpape2026-02-15 21:41Add defensive design for recreating point layer
- Pull request#1167anwai982026-02-14 17:01
- Issue#1084anwai982026-02-13 14:04failure and errors running finetune_hela.py
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 465 stars here means stars gained during the window, not the repo's star count.