CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)
active 2023-10-20 → 2026-06-20 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 975 days from 2023-10-20 to 2026-06-20. Pushes: 221 total, peak 19 in a day. Pull requests: 28 total, peak 6 in a day. Issues: 47 total, peak 5 in a day. Comments: 109 total, peak 14 in a day. Stars: 69 total, peak 17 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| catpetersen | 302 | 216 | 23 | 52 |
| alifarhat40 | 23 | 0 | 0 | 20 |
| rcorces | 6 | 4 | 1 | 0 |
| tianxuekai | 5 | 0 | 0 | 5 |
| 1667857557 | 4 | 0 | 0 | 4 |
| YiweiNiu | 4 | 0 | 0 | 2 |
| Pentayouth | 4 | 0 | 0 | 3 |
| agdenadel | 4 | 0 | 4 | 0 |
| klai001 | 3 | 0 | 0 | 1 |
| idweiner | 3 | 0 | 0 | 2 |
| inofechm | 3 | 0 | 0 | 1 |
| YanCheer | 3 | 0 | 0 | 0 |
| smorabit | 3 | 0 | 0 | 2 |
| hxpGit512 | 3 | 0 | 0 | 3 |
| iacopogentile | 3 | 0 | 0 | 1 |
| gaohaohoa | 3 | 0 | 0 | 1 |
| Carolina-Toste | 2 | 0 | 0 | 0 |
| maggiebr0wn | 2 | 0 | 0 | 1 |
| ejscience | 2 | 0 | 0 | 1 |
| raydioactive | 2 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#48BiotechPedro2026-04-27 09:58Parallelization using {mori}
- Issue#47sian-wood2026-03-17 11:19Error when `max_clusters != "auto"`
- Issue comment#29Landau19942025-09-22 19:04Pruning stuck checking for underclustering
- Issue#44LongpanUPC2025-08-08 09:52It takes more than 6 hours for CHOIR dealing with 170k cells using 100 CPUs?
- Issue comment#42laleoarrow2025-07-11 06:03CHOIR yielded ~50 T-cell clusters—expected or over-splitting?
- Issue#41raydioactive2025-06-17 19:54Max number of cells?
- Issue#41raydioactive2025-06-17 15:35Max number of cells?
- Issue comment#40FY100862025-06-15 08:40Can I use plotCHOIR to show the prediction accuracy scores of my pre-generated clusters?
- Issue#40FY100862025-06-14 15:02Can I use plotCHOIR to show the prediction accuracy scores of my pre-generated clusters?
- Issue#39YanCheer2025-05-24 10:04Mat::submat(): indices out of bounds or incorrectly used
- Issue#38YanCheer2025-05-23 12:46Is neccessary to run on anchor-integrated data merged across multiple samples??
- Issue comment#28Fantasque682025-05-23 11:47weird CHOIR result on B cell subtype discovery from a 32-sample cohort.
- Issue#38YanCheer2025-05-23 09:48Is neccessary to run on anchor-integrated data merged across multiple samples??
- Issue comment#34jianghao07992025-05-18 07:17Installation error
- Issue comment#29mohdmeawad2025-05-11 14:25Pruning stuck checking for underclustering
- Issue comment#37catpetersen2025-05-10 06:15Crashing on large data set
- Issue#37catpetersen2025-05-10 06:15Crashing on large data set
- Issue comment#34catpetersen2025-05-10 06:13Installation error
- Issue#34catpetersen2025-05-10 06:13Installation error
- Issue comment#31catpetersen2025-05-10 06:12The clusters identified by CHOIR exhibit a "dispersed" pattern.
- Issue#31catpetersen2025-05-10 06:12The clusters identified by CHOIR exhibit a "dispersed" pattern.
- Issue comment#28hxpGit5122025-05-10 06:11weird CHOIR result on B cell subtype discovery from a 32-sample cohort.
- Issue comment#28catpetersen2025-05-10 06:11weird CHOIR result on B cell subtype discovery from a 32-sample cohort.
- Issue#28catpetersen2025-05-10 06:11weird CHOIR result on B cell subtype discovery from a 32-sample cohort.
- Issue comment#15catpetersen2025-05-10 06:09memory limit when sourcing R script
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 69 stars here means stars gained during the window, not the repo's star count.