SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
active 2023-09-15 → 2026-05-21 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 980 days from 2023-09-15 to 2026-05-21. Pushes: 25 total, peak 4 in a day. Pull requests: 3 total, peak 2 in a day. Issues: 41 total, peak 2 in a day. Comments: 102 total, peak 7 in a day. Stars: 25 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| wshuai294 | 102 | 25 | 2 | 62 |
| bsb2014 | 14 | 0 | 0 | 7 |
| lidd77 | 9 | 0 | 0 | 3 |
| vegetableyu | 4 | 0 | 0 | 3 |
| jackzhong1995 | 4 | 0 | 0 | 4 |
| Kelly-ST-HRI | 4 | 0 | 1 | 2 |
| alisamatisse | 3 | 0 | 0 | 2 |
| anabbi | 3 | 0 | 0 | 2 |
| 9421g | 3 | 0 | 0 | 3 |
| RTCarmo | 3 | 0 | 0 | 1 |
| jonasscheid | 2 | 0 | 0 | 2 |
| yuzhuxuyang | 2 | 0 | 0 | 1 |
| zplizzi | 2 | 0 | 0 | 2 |
| Jwong684 | 2 | 0 | 0 | 0 |
| ddzhang3 | 2 | 0 | 0 | 2 |
| jonng1000 | 1 | 0 | 0 | 0 |
| Kyung-TaeLee | 1 | 0 | 0 | 0 |
| andrewgalbraith21 | 1 | 0 | 0 | 0 |
| rohinimopuri | 1 | 0 | 0 | 0 |
| panguangze | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#68jonasscheid2026-05-21 15:02Bioconda distribution
- Issue comment#47bbimber2026-05-13 23:06ERROR: Too many blocks, the phasing process must be wrong.
- Issue comment#71jonasscheid2026-03-16 10:37Fix source builtin error and document conda wrapper commands
- Issue comment#68wshuai2942026-03-05 19:02Bioconda distribution
- Issue comment#69wshuai2942026-03-05 19:01Add conda/bioconda packaging support
- Issue comment#67wshuai2942026-02-21 18:15Typing command may fail silently when underlying process encounters errors
- Issue comment#61jonasfreimuth2026-02-19 16:49Remove need for conda environment in repo
- Issue#65wshuai2942025-12-18 20:53Request making file path for reference genome flexible for ExtractHLAread.sh
- Issue comment#65wshuai2942025-12-18 20:53Request making file path for reference genome flexible for ExtractHLAread.sh
- Issue comment#65wshuai2942025-12-18 05:54Request making file path for reference genome flexible for ExtractHLAread.sh
- Issue#65jonng10002025-12-18 02:13Request making file path for reference genome flexible for ExtractHLAread.sh
- Issue comment#64jackzhong19952025-12-12 09:51Some individual has empty "hla.result.txt" but "hla.result.g.group.txt" is not
- Issue comment#64jackzhong19952025-12-12 08:42Some individual has empty "hla.result.txt" but "hla.result.g.group.txt" is not
- Issue comment#64jackzhong19952025-12-12 08:01Some individual has empty "hla.result.txt" but "hla.result.g.group.txt" is not
- Issue comment#64wshuai2942025-12-11 10:14Some individual has empty "hla.result.txt" but "hla.result.g.group.txt" is not
- Issue comment#64jackzhong19952025-12-11 02:26Some individual has empty "hla.result.txt" but "hla.result.g.group.txt" is not
- Issue comment#64wshuai2942025-12-10 20:13Some individual has empty "hla.result.txt" but "hla.result.g.group.txt" is not
- Issue comment#59wshuai2942025-09-19 18:23Remove anaconda & default channel
- Pull request#60wshuai2942025-09-18 17:47
- Releasewshuai2942025-08-21 21:18SpecHLA v1.0.8
- Issue#55wshuai2942025-08-21 21:13Including a newer set of HLAs in humans in your db
- Issue comment#14zplizzi2025-08-21 18:41DRB3 and DRB5
- Issue comment#55zplizzi2025-08-21 03:46Including a newer set of HLAs in humans in your db
- Issue comment#58wshuai2942025-08-10 16:54How does bam2FastQ work in ExtractHLAread.sh?
- Issue#58Kyung-TaeLee2025-08-07 01:00How does bam2FastQ work in ExtractHLAread.sh?
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 25 stars here means stars gained during the window, not the repo's star count.