Accurate Typing of Diverse Immune-Related Gene Families from Long-Read Sequencing Data. It can handle HLA, KIR, IG, TCR, CYP gene families. It supports both WGS and amplicon data. It supports PacBio and Nanopore data.
active 2025-02-04 → 2026-05-10 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 461 days from 2025-02-04 to 2026-05-10. Pushes: 94 total, peak 13 in a day. Pull requests: 2 total, peak 2 in a day. Issues: 17 total, peak 3 in a day. Comments: 34 total, peak 3 in a day. Stars: 27 total, peak 5 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| wshuai294 | 67 | 51 | 2 | 9 |
| troyeeee | 49 | 41 | 0 | 7 |
| reshu23 | 12 | 0 | 0 | 10 |
| alisamatisse | 4 | 0 | 0 | 2 |
| DayTimeMouse | 4 | 0 | 0 | 1 |
| marshelma | 4 | 0 | 0 | 2 |
| sunchen-1 | 3 | 0 | 0 | 2 |
| junyao829 | 2 | 0 | 0 | 1 |
| zhouqian177 | 1 | 1 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Releasewshuai2942026-03-08 21:39SpecImmune v0.0.3
- Issue#34wshuai2942026-02-20 18:27HLA typing from diploid assemblie
- Issue comment#43troyeeee2025-12-14 11:45Issues getting full output with ONT data
- Issue comment#42marshelma2025-08-20 02:58Issue with nanopore sequencing data on multiplex PCR
- Issue#42marshelma2025-08-20 02:58Issue with nanopore sequencing data on multiplex PCR
- Issue comment#42wshuai2942025-08-20 02:55Issue with nanopore sequencing data on multiplex PCR
- Issue comment#42marshelma2025-08-20 02:41Issue with nanopore sequencing data on multiplex PCR
- Issue comment#42wshuai2942025-08-19 06:34Issue with nanopore sequencing data on multiplex PCR
- Issue#42marshelma2025-08-19 02:16Issue with nanopore sequencing data on multiplex PCR
- Issue comment#41junyao8292025-07-08 03:20TypeError: 'type' object is not subscriptable when running dysgu-call
- Issue#41junyao8292025-07-08 03:20TypeError: 'type' object is not subscriptable when running dysgu-call
- Issue comment#41troyeeee2025-07-06 06:08TypeError: 'type' object is not subscriptable when running dysgu-call
- Issue#38wshuai2942025-07-04 18:58no HLA-DRB5 alleles
- Releasewshuai2942025-05-27 05:47SpecImmune v0.0.1
- Issue#36troyeeee2025-05-17 09:59Pedigree phasing with long read data
- Releasewshuai2942025-05-16 20:54SpecImmune v0.0.1
- Issue#40wshuai2942025-05-03 07:02Invalid argument when create fq file
- Issue comment#40wshuai2942025-04-30 06:29Invalid argument when create fq file
- Issue comment#40sunchen-12025-04-30 06:08Invalid argument when create fq file
- Issue comment#40wshuai2942025-04-29 02:51Invalid argument when create fq file
- Issue comment#40sunchen-12025-04-29 01:14Invalid argument when create fq file
- Issue comment#40wshuai2942025-04-28 19:59Invalid argument when create fq file
- Issue#40sunchen-12025-04-28 08:03Invalid argument when create fq file
- Pull request#39wshuai2942025-04-25 08:48
- Pull request#39wshuai2942025-04-25 08:48
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 27 stars here means stars gained during the window, not the repo's star count.