Tools to process and analyze deep sequencing data.
active 2024-07-16 → 2026-08-05 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 751 days from 2024-07-16 to 2026-08-05. Pushes: 28 total, peak 6 in a day. Pull requests: 10 total, peak 3 in a day. Issues: 26 total, peak 2 in a day. Comments: 19 total, peak 3 in a day. Stars: 39 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| WardDeb | 28 | 20 | 7 | 1 |
| adRn-s | 6 | 6 | 0 | 0 |
| bgruening | 3 | 0 | 0 | 1 |
| wsowens | 3 | 0 | 0 | 2 |
| bounlu | 2 | 0 | 1 | 0 |
| VihanYeh | 2 | 0 | 0 | 1 |
| ShannonTown | 2 | 0 | 0 | 1 |
| sunta3iouxos | 2 | 0 | 0 | 1 |
| ljw20180420 | 2 | 0 | 0 | 0 |
| ZhaoRanze | 2 | 0 | 0 | 2 |
| lldelisle | 1 | 0 | 0 | 0 |
| beyondpie | 1 | 0 | 0 | 0 |
| miaoxiannv | 1 | 0 | 0 | 1 |
| helloworldABCD1234 | 1 | 0 | 0 | 0 |
| hzauyangxin | 1 | 0 | 0 | 0 |
| random758dr-rgb | 1 | 0 | 0 | 0 |
| xiaobaiymq | 1 | 0 | 0 | 1 |
| QuentinDuvertCurie | 1 | 0 | 0 | 0 |
| yiwangxi-tech | 1 | 0 | 0 | 0 |
| ps-puneetsharma | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#1425random758dr-rgb2026-03-16 06:09cut and tag
- Issue comment#1422eglsdl2026-03-04 17:33ComputeMatrix fails to pick up a fraction of values
- Issue comment#1348ckuenne2026-02-02 10:24Wondering why many sharp peaks created in the deeptools 2.0 heatmap profile
- Issue comment#1348miaoxiannv2026-02-02 10:06Wondering why many sharp peaks created in the deeptools 2.0 heatmap profile
- Issue#1421kijiy2025-10-07 15:37alignmentSieve v3.5.6 creates too many open files
- Pull request#1420yuw4442025-10-03 20:01
- Issue#1418zjsyj2025-09-26 02:57potential duplicate code
- Issue#1417helloworldABCD12342025-08-30 17:33–regionsFileName Dear Professor
- Issue comment#1348sunta3iouxos2025-07-15 09:07Wondering why many sharp peaks created in the deeptools 2.0 heatmap profile
- Issue#1411sunta3iouxos2025-07-15 08:45computeMatrix scale-regions A region that is shorter than the bin size
- Issue#1410QuentinDuvertCurie2025-07-15 07:47plotFingerprint results depend on BAM file order — input sorting needed
- Issue#1409lldelisle2025-07-08 12:01Add a param in plotHeatmap to choose the color of the summary profile
- Issue#1407wddyzxxx2025-07-04 12:23some blank regions show in the plotHeatmap plot
- Issue#1406Simple532025-06-17 11:19Could not get matrix of removing outliers
- Issue#1404ps-puneetsharma2025-05-28 14:31RPGC normalization (--normalizeUsing RPGC) is not supported with bamCompare!
- Issue#1403yfZhang992025-05-16 02:40The enrichment of signal values near the TSS on the sense and antisense strands
- Issue#1401junjunlab2025-05-09 03:12computematrix not work for bigwigAverage output
- Issue#1392yiwangxi-tech2025-04-12 14:48installation failed of deeptools
- Issue comment#1180li13111394812025-04-09 05:04alignmentSieve returns a truncated bam
- Issue comment#1217ZhaoRanze2025-04-02 01:35Average plot using all groups
- Issue comment#1217xubeisi2025-04-02 01:23Average plot using all groups
- Issue comment#1217ZhaoRanze2025-04-02 01:07Average plot using all groups
- Issue comment#1384wsowens2025-03-05 04:12computeMatrix runs substantially slower than expected
- Issue comment#1384wsowens2025-03-04 04:13computeMatrix runs substantially slower than expected
- Issue#1384wsowens2025-03-04 03:46computeMatrix runs substantially slower than expected
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 39 stars here means stars gained during the window, not the repo's star count.