SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
active 2023-08-18 → 2026-06-14 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1032 days from 2023-08-18 to 2026-06-14. Pushes: 21 total, peak 6 in a day. Pull requests: 3 total, peak 1 in a day. Issues: 11 total, peak 2 in a day. Comments: 6 total, peak 2 in a day. Stars: 44 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| apumaparna | 20 | 20 | 0 | 0 |
| shiqi-yang | 3 | 0 | 0 | 1 |
| liziyu-000 | 3 | 0 | 0 | 2 |
| arhowe00 | 2 | 0 | 2 | 0 |
| li-xuyang28 | 2 | 0 | 0 | 1 |
| ChangSuBiostats | 2 | 0 | 0 | 1 |
| xai990 | 1 | 0 | 0 | 1 |
| chenc327 | 1 | 0 | 0 | 0 |
| Huangy57 | 1 | 0 | 1 | 0 |
| NPTL1201 | 1 | 0 | 0 | 0 |
| josephineyates | 1 | 0 | 0 | 0 |
| LiuCanidk | 1 | 0 | 0 | 0 |
| sitarapersad | 1 | 1 | 0 | 0 |
| Aya-Balbaa | 1 | 0 | 0 | 0 |
| Branking24 | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#57xai9902025-07-11 20:47Aggregation of expression data ends up in matrix filled with NaN's
- Issue#78Branking242025-04-18 21:15SEACells Has no Attribute 'genescores'
- Issue#72li-xuyang282024-09-29 22:59Error fitting model on Jupyter lab via HPC cluster
- Issue comment#70li-xuyang282024-09-29 20:31How to run SEACells efficiently on large-scale dataset
- Issue#71LiuCanidk2024-09-01 15:37Error when model.construct_kernel_matrix: can SEACells be applied in python command line, not just in Jupyter?
- Pull request#68Huangy572024-06-28 21:47
- Issue#60Aya-Balbaa2024-04-05 04:48maxFragmentLength=147
- Issue#58liziyu-0002024-03-28 03:16No speed increase was observed when use_gpu=True
- Issue comment#41liziyu-0002024-02-24 13:15Issue with model.initialize_archetypes()
- Issue comment#41liziyu-0002024-02-24 12:32Issue with model.initialize_archetypes()
- Issue#56NPTL12012024-01-04 03:10Scale or not scale be more suitable for computation of SEACells?
- Issue comment#55shiqi-yang2023-12-19 03:57conda environment yaml file dependency seems conflict
- Issue#55shiqi-yang2023-12-19 03:57conda environment yaml file dependency seems conflict
- Issue#55shiqi-yang2023-12-19 03:45conda environment yaml file dependency seems conflict
- Issue#54chenc3272023-11-02 02:23wonder why the @parm `ceiling` can be set to 10^9
- Issue#53josephineyates2023-10-26 19:27[Question] Algorithm for PWM computation
- Issue comment#52ChangSuBiostats2023-10-05 21:20Fail to install seacells via conda due to conflicts in environment.yaml
- Issue#52ChangSuBiostats2023-10-05 21:06Fail to install seacells via conda due to conflicts in environment.yaml
- Pull request#51arhowe002023-09-21 03:47
- Pull request#51arhowe002023-08-18 22:49
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 44 stars here means stars gained during the window, not the repo's star count.