PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.
active 2023-10-06 → 2026-03-24 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 901 days from 2023-10-06 to 2026-03-24. Pushes: 65 total, peak 12 in a day. Pull requests: 11 total, peak 2 in a day. Issues: 12 total, peak 2 in a day. Comments: 12 total, peak 3 in a day. Stars: 33 total, peak 6 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| martinvoegele | 94 | 65 | 10 | 9 |
| H-EKE | 2 | 0 | 0 | 1 |
| dependabot[bot] | 2 | 0 | 1 | 1 |
| Nithishwer | 1 | 0 | 0 | 0 |
| github-actions[bot] | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue#77martinvoegele2026-02-07 22:28Water density grid generation fails for GROMACS water naming (WAT/O)
- Issue comment#76martinvoegele2025-04-06 17:55Option to apply transformations to universes before featurization
- Issue comment#76martinvoegele2025-04-06 17:54Option to apply transformations to universes before featurization
- Issue comment#76github-actions[bot]2025-04-06 17:29Option to apply transformations to universes before featurization
- Issue#76Nithishwer2025-04-06 17:28Option to apply transformations to universes before featurization
- Issue comment#75martinvoegele2025-03-02 00:34Trying to run PENSA with AMBER files
- Issue#73H-EKE2025-02-07 00:11AttributeError: 'XTCReader' object has no attribute '_xdr'
- Issue comment#73H-EKE2025-02-07 00:11AttributeError: 'XTCReader' object has no attribute '_xdr'
- Issue comment#73martinvoegele2025-02-06 02:52AttributeError: 'XTCReader' object has no attribute '_xdr'
- Issue comment#72martinvoegele2025-02-04 04:04Error in running the tutorial
- Issue#72martinvoegele2025-02-04 04:04Error in running the tutorial
- Issue comment#49martinvoegele2025-01-27 03:59ValueError: could not convert string to float: 'timeseries'
- Issue#49martinvoegele2025-01-27 03:59ValueError: could not convert string to float: 'timeseries'
- Issue#70martinvoegele2025-01-27 03:00Update to Python 3.12 and MDAnalysis 2.8
- Pull request#71martinvoegele2025-01-27 03:00
- Pull request#71martinvoegele2025-01-27 03:00
- Issue comment#70martinvoegele2025-01-26 22:51Update to Python 3.12 and MDAnalysis 2.8
- Issue#70martinvoegele2025-01-26 02:22Update to Python 3.12 and MDAnalysis 2.8
- Issue comment#42martinvoegele2025-01-25 22:21Sidechain torsions and Backbone C-Alpha Distances Error
- Issue#42martinvoegele2025-01-25 22:21Sidechain torsions and Backbone C-Alpha Distances Error
- Issue#68martinvoegele2025-01-25 22:12XTC file not recognized with extract_coordinates
- Pull request#69martinvoegele2025-01-25 22:12
- Pull request#69martinvoegele2025-01-25 22:11
- Releasemartinvoegele2024-12-07 00:35PENSA 0.5.0
- Issue#62martinvoegele2024-08-07 00:52Update installation instruction for tutorial
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 33 stars here means stars gained during the window, not the repo's star count.