PyRate is a program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework.
active 2023-08-15 → 2026-06-02 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1023 days from 2023-08-15 to 2026-06-02. Pushes: 307 total, peak 20 in a day. Pull requests: 7 total, peak 2 in a day. Issues: 17 total, peak 2 in a day. Comments: 22 total, peak 2 in a day. Stars: 29 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| thauffe | 287 | 269 | 1 | 11 |
| dsilvestro | 43 | 37 | 1 | 4 |
| shelleylwang | 7 | 0 | 4 | 1 |
| Joukje2 | 3 | 0 | 0 | 2 |
| mishawhittingham | 3 | 0 | 0 | 1 |
| isovaline2230 | 2 | 0 | 0 | 0 |
| zhaotao876 | 2 | 0 | 0 | 1 |
| XuWeiEvo | 1 | 0 | 0 | 0 |
| megaraptor1 | 1 | 0 | 0 | 1 |
| davidecarlson | 1 | 0 | 1 | 0 |
| AFg6K7h4fhy2 | 1 | 0 | 0 | 0 |
| supersnes1 | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Pull request#56shelleylwang2025-12-18 16:58
- Issue#48isovaline22302025-03-20 13:29[RuntimeWarning: invalid value encountered in scalar divide] error when running RJMCMC
- Issue comment#55thauffe2025-02-27 10:51-combLog does not work on non-RJMCMC runs
- Issue#55thauffe2025-02-27 10:51-combLog does not work on non-RJMCMC runs
- Issue#55shelleylwang2025-02-25 16:21-combLog does not work on non-RJMCMC runs
- Issue comment#54zhaotao8762025-01-21 04:50"ValueError: could not convert string to float" when plotting range-through diversity trajectory (lineage through time plot)
- Issue comment#54thauffe2025-01-20 11:30"ValueError: could not convert string to float" when plotting range-through diversity trajectory (lineage through time plot)
- Issue#54thauffe2025-01-20 11:30"ValueError: could not convert string to float" when plotting range-through diversity trajectory (lineage through time plot)
- Issue#54zhaotao8762025-01-20 04:12"ValueError: could not convert string to float" when plotting range-through diversity trajectory (lineage through time plot)
- Issue comment#53thauffe2025-01-12 17:30Fix to PyRateMBD RTT plot code
- Pull request#53thauffe2025-01-12 17:30
- Pull request#53shelleylwang2025-01-10 22:07
- Issue#50thauffe2024-12-16 08:56Question about GPU capability
- Pull request#52shelleylwang2024-11-27 16:24
- Pull request#52shelleylwang2024-11-27 16:24
- Issue comment#50thauffe2024-11-25 20:01Question about GPU capability
- Issue comment#51thauffe2024-11-25 18:25Update lib_utilities.py write_ts_te_table function
- Issue comment#51shelleylwang2024-11-22 18:09Update lib_utilities.py write_ts_te_table function
- Issue comment#51thauffe2024-11-21 20:12Update lib_utilities.py write_ts_te_table function
- Issue#50shelleylwang2024-11-12 15:53Question about GPU capability
- Issue comment#49dsilvestro2024-09-03 06:51Possible Discrepancy With `PyRate` Licensing
- Issue#49dsilvestro2024-09-03 06:51Possible Discrepancy With `PyRate` Licensing
- Issue#49AFg6K7h4fhy22024-09-01 05:55Possible Discrepancy With `PyRate` Licensing
- Issue#48isovaline22302024-08-31 15:54[RuntimeWarning: invalid value encountered in scalar divide] error when running RJMCMC
- Issue comment#47dsilvestro2024-06-27 06:40pin numpy to pre-2.0 version
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 29 stars here means stars gained during the window, not the repo's star count.