SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
active 2023-09-10 → 2026-03-07 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 910 days from 2023-09-10 to 2026-03-07. Pushes: 0 total, peak 0 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 13 total, peak 2 in a day. Comments: 11 total, peak 3 in a day. Stars: 80 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| dviraran | 5 | 0 | 0 | 5 |
| esoaress | 4 | 0 | 0 | 1 |
| Rohit-Satyam | 3 | 0 | 0 | 1 |
| aleferna | 1 | 0 | 0 | 1 |
| isaiao01 | 1 | 0 | 0 | 0 |
| dtm2451 | 1 | 0 | 0 | 1 |
| LeaLe88 | 1 | 0 | 0 | 0 |
| Jessa135 | 1 | 0 | 0 | 0 |
| yamihn | 1 | 0 | 0 | 0 |
| kristifourie | 1 | 0 | 0 | 1 |
| cesarsierran | 1 | 0 | 0 | 0 |
| ArzooShamoon | 1 | 0 | 0 | 0 |
| nitinmahajan20 | 1 | 0 | 0 | 0 |
| dgoekbuget | 1 | 0 | 0 | 1 |
| vladimirkovacevic | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#164dviraran2024-10-06 06:25split test dataset and see differences in annotation
- Issue#164yamihn2024-10-04 21:26split test dataset and see differences in annotation
- Issue comment#163esoaress2024-06-06 13:42Assigning cell types problem
- Issue#163esoaress2024-06-06 13:42Assigning cell types problem
- Issue#163esoaress2024-06-06 13:41Assigning cell types problem
- Issue#163esoaress2024-06-05 15:27Assigning cell types problem
- Issue comment#162dviraran2024-05-21 05:55Error while downloading SingleR
- Issue#162isaiao012024-05-20 20:59Error while downloading SingleR
- Issue comment#147dviraran2024-05-13 09:10Error in is.null(rownames(x)) && nrow(x) : invalid 'y' type in 'x && y'
- Issue comment#161dviraran2024-05-13 09:10Error: useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE. Traceback:
- Issue comment#147aleferna2024-05-13 09:00Error in is.null(rownames(x)) && nrow(x) : invalid 'y' type in 'x && y'
- Issue#161ArzooShamoon2024-05-10 12:01Error: useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE. Traceback:
- Issue comment#160dviraran2024-04-12 14:54SingleR - "sc_data" is missing
- Issue#160nitinmahajan202024-04-12 14:48SingleR - "sc_data" is missing
- Issue comment#147kristifourie2024-04-03 08:52Error in is.null(rownames(x)) && nrow(x) : invalid 'y' type in 'x && y'
- Issue#159cesarsierran2024-03-19 16:37Positive correlation between the identity score of the right identities and the rest
- Issue comment#158dgoekbuget2024-03-02 02:07SingleR error
- Issue#158Jessa1352024-02-20 04:12SingleR error
- Issue#157LeaLe882023-11-30 14:25Annotate Seurat object of several patients
- Issue comment#156Rohit-Satyam2023-11-15 16:06Can we use SingleR to annotate BulkRNAseq when reference is also bulk
- Issue#156Rohit-Satyam2023-11-15 16:06Can we use SingleR to annotate BulkRNAseq when reference is also bulk
- Issue comment#156dtm24512023-11-15 15:25Can we use SingleR to annotate BulkRNAseq when reference is also bulk
- Issue#156Rohit-Satyam2023-11-15 08:53Can we use SingleR to annotate BulkRNAseq when reference is also bulk
- Issue#155vladimirkovacevic2023-09-25 10:20Microwell-Seq Mouse Cell Atlas link on README.md is not working
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 80 stars here means stars gained during the window, not the repo's star count.