Codebase of BioPathNet to perform link prediction on biomedical knowledge graphs
active 2024-08-08 → 2026-05-03 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 634 days from 2024-08-08 to 2026-05-03. Pushes: 21 total, peak 5 in a day. Pull requests: 4 total, peak 1 in a day. Issues: 5 total, peak 2 in a day. Comments: 33 total, peak 16 in a day. Stars: 12 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| emyyue | 60 | 16 | 4 | 25 |
| SvitlanaOleshko | 15 | 5 | 0 | 5 |
| EricDeveaud | 3 | 0 | 0 | 1 |
| clairelaudy | 2 | 0 | 0 | 2 |
| ZhengtingHuang888 | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#21clairelaudy2026-02-16 14:26Example of config file for visuaization after inductive prediction
- Issue comment#19clairelaudy2026-01-15 14:31RunetimeError: invalid multimodal distribution
- Issue comment#19emyyue2026-01-14 17:54RunetimeError: invalid multimodal distribution
- Issue comment#19emyyue2026-01-09 11:56RunetimeError: invalid multimodal distribution
- Issue comment#18emyyue2026-01-05 09:57Documentation on predictions
- Issue comment#16emyyue2025-12-02 16:52visualize_graph.py :: cuda error
- Issue comment#16EricDeveaud2025-12-02 13:14visualize_graph.py :: cuda error
- Issue#15emyyue2025-12-02 12:21typo in visualize_graph.py ?
- Issue#16EricDeveaud2025-11-28 14:21visualize_graph.py :: cuda error
- Issue#15EricDeveaud2025-11-28 14:00typo in visualize_graph.py ?
- Releaseemyyue2025-08-25 19:35BioPathNet v0.1
- Issue#12emyyue2025-08-25 19:32IndexError when running visualization
- Pull request#14emyyue2025-06-23 09:58
- Issue comment#12emyyue2025-06-06 10:52IndexError when running visualization
- Pull request#7emyyue2025-01-02 14:52
- Pull request#6emyyue2024-12-30 10:20
- Pull request#5emyyue2024-12-07 20:56
- Issue comment#2emyyue2024-08-15 09:40BioPathNet on synthetic lethality (SL)
- Issue#2ZhengtingHuang8882024-08-15 07:20BioPathNet on synthetic lethality (SL)
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 12 stars here means stars gained during the window, not the repo's star count.