Tutorials to learn real-time analysis that includes accessing epidemiological delays, estimating transmission metrics, forecasting, and severity from aggregated incidence data, superspreading from line list and contact data, and simulating transmission chains.
active 2024-02-08 → 2026-07-28 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 902 days from 2024-02-08 to 2026-07-28. Pushes: 766 total, peak 56 in a day. Pull requests: 174 total, peak 9 in a day. Issues: 158 total, peak 13 in a day. Comments: 519 total, peak 63 in a day. Stars: 0 total, peak 0 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| avallecam | 889 | 317 | 135 | 172 |
| github-actions[bot] | 480 | 391 | 0 | 89 |
| juan-umana | 125 | 0 | 0 | 63 |
| Bisaloo | 80 | 36 | 32 | 9 |
| CarmenTamayo | 51 | 0 | 0 | 41 |
| GeraldineGomez | 32 | 0 | 0 | 30 |
| adamkucharski | 27 | 3 | 1 | 21 |
| jamesmbaazam | 26 | 0 | 0 | 14 |
| Degoot-AM | 26 | 8 | 0 | 10 |
| pratikunterwegs | 25 | 0 | 0 | 20 |
| CyGei | 23 | 0 | 0 | 23 |
| joshwlambert | 15 | 1 | 0 | 10 |
| jd-otero | 12 | 0 | 0 | 11 |
| epiverse-trace-bot | 11 | 6 | 5 | 0 |
| github-advanced-security[bot] | 2 | 0 | 0 | 2 |
| sbfnk | 1 | 0 | 0 | 1 |
| froggleston | 1 | 0 | 0 | 1 |
| Liu499-create | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Pull request#259epiverse-trace-bot2026-03-03 02:38
- Issue comment#256avallecam2026-02-11 09:07fix outputs from epinow2 after update PR
- Pull request#257avallecam2026-02-11 08:26
- Pull request#254epiverse-trace-bot2026-01-20 01:24
- Issue comment#253github-actions[bot]2026-01-12 17:04test run
- Issue comment#250github-actions[bot]2025-10-24 13:28replace vis_epicontacts with plot
- Pull request#250avallecam2025-10-24 13:27
- Issue comment#248github-actions[bot]2025-10-24 10:40revise terminology in superspreading estimate
- Issue comment#247github-actions[bot]2025-10-22 18:26Clarify seed specification for simulate_chains function
- Pull request#247avallecam2025-10-22 18:26
- Issue comment#246github-actions[bot]2025-10-20 15:31add note on prepare data
- Issue comment#244github-actions[bot]2025-10-17 16:25Fix link to tutorial on accessing epidemiological delays
- Issue comment#241github-actions[bot]2025-10-17 09:37refine explanations about density as function
- Issue comment#240github-actions[bot]2025-10-16 17:36add spoiler on why density as function
- Pull request#240avallecam2025-10-16 17:35
- Issue comment#239github-actions[bot]2025-10-16 10:45include R package installation instructions
- Pull request#239avallecam2025-10-16 10:45
- Pull request#230avallecam2025-10-08 01:24
- Pull request#230avallecam2025-10-08 00:42
- Issue comment#229github-actions[bot]2025-10-01 20:53add verification step
- Issue comment#228github-actions[bot]2025-09-29 18:19fix typo
- Pull request#227avallecam2025-09-29 17:47
- Pull request#226avallecam2025-09-29 17:33
- Pull request#221avallecam2025-09-25 13:17
- Issue comment#221avallecam2025-09-25 09:41Theoretical_background
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 0 stars here means stars gained during the window, not the repo's star count.