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eringill/chronic_infection_python

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A simple GUI that allows users to check whether mutations from a SARS-CoV-2 genome best fit a mutational distribution of genomes derived from global, chronic, or deer infections.

active 2024-03-212025-10-30 (UTC)

Partial coverage20,524 / 26,280 hourly files (78%) · 2 absent upstream · 5,753 failed, retryable2023-08-152026-08-13 (UTC)— sampled evenly across the window, so rankings and trends hold; absolute counts scale up.
Events
102
Pushes
69
Pull requests
12
Issues
5
Stars
0
Forks
0

Activity over time

Daily event counts in the loaded window

Line chart, 589 days from 2024-03-21 to 2025-10-30. Pushes: 69 total, peak 6 in a day. Pull requests: 12 total, peak 9 in a day. Issues: 5 total, peak 2 in a day. Comments: 10 total, peak 5 in a day. Stars: 0 total, peak 0 in a day.

  • Pushes
  • Pull requests
  • Issues
  • Comments
  • Stars

Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.

Top contributors

Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity

ContributorContributionsPushesPRsComments
eringill8969124
fionabrinkman6005
corneliusroemer1001

Recent activity

Latest issues, pull requests and releases

  • Issue comment#14eringill2024-08-28 20:47
    Idea: wrap in workflow, running Nextclade and using that for substitution list
  • Issue#13eringill2024-08-21 19:04
    Make CLI available
  • Pull request#20eringill2024-08-21 19:04
  • Issue comment#20fionabrinkman2024-08-15 04:03
    feat: add cli script to run from command line
  • Issue comment#15corneliusroemer2024-08-14 19:07
    Website is down: getting 503
  • Pull request#12eringill2024-06-28 19:14
  • Pull request#12eringill2024-06-28 18:58
  • Pull request#9eringill2024-06-28 18:56
  • Pull request#11eringill2024-06-28 18:54
  • Pull request#11eringill2024-06-28 18:53
  • Pull request#9eringill2024-06-28 18:51
  • Pull request#10eringill2024-06-28 18:50
  • Pull request#9eringill2024-06-28 18:49
  • Pull request#9eringill2024-06-28 18:42
  • Issue comment#8eringill2024-06-19 17:26
    non-cannonical nucleotides?
  • Issue#8eringill2024-06-19 17:26
    non-cannonical nucleotides?
  • Issue comment#4fionabrinkman2024-06-19 02:56
    Example - molnupiravir
  • Issue#8fionabrinkman2024-06-19 02:53
    non-cannonical nucleotides?
  • Issue comment#4fionabrinkman2024-06-19 02:08
    Example - mutator
  • Issue comment#4fionabrinkman2024-06-19 01:50
    Example - mutator
  • Issue comment#3fionabrinkman2024-06-19 01:41
    Examples
  • Pull request#7eringill2024-06-18 23:08
  • Pull request#7eringill2024-06-18 23:08
  • Issue comment#6eringill2024-06-18 22:59
    One mutation enough?
  • Issue#6eringill2024-06-18 22:59
    One mutation enough?

Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 0 stars here means stars gained during the window, not the repo's star count.