Read in Xenium, CosMx, and Vizgen data as Spatial or SingleCell Experiment object.
active 2023-11-20 → 2025-07-14 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 604 days from 2023-11-20 to 2025-07-23. Pushes: 38 total, peak 8 in a day. Pull requests: 4 total, peak 4 in a day. Issues: 5 total, peak 1 in a day. Comments: 12 total, peak 3 in a day. Stars: 16 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| estellad | 49 | 38 | 4 | 5 |
| HelenaLC | 5 | 0 | 0 | 3 |
| methornton | 4 | 0 | 0 | 3 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#6estellad2025-07-23 10:12Update readMerscopeSXE.R
- Issue comment#5HelenaLC2025-02-03 08:57`readCosmxSXE` discards `fov_positions_file.csv`
- Issue comment#5estellad2025-02-03 08:52`readCosmxSXE` discards `fov_positions_file.csv`
- Issue comment#5HelenaLC2025-02-03 07:58`readCosmxSXE` discards `fov_positions_file.csv`
- Issue comment#5estellad2025-02-02 22:11`readCosmxSXE` discards `fov_positions_file.csv`
- Issue#5HelenaLC2025-02-02 11:44`readCosmxSXE` discards `fov_positions_file.csv`
- Issue#4estellad2025-01-28 12:53optionally separating negative probes & false codes in readCosmxSXE()
- Issue comment#4HelenaLC2024-09-30 07:43optionally separating negative probes & false codes in readCosmxSXE()
- Issue#4HelenaLC2024-09-14 05:37optionally separating negative probes & false codes in readCosmxSXE()
- Issue comment#3methornton2024-08-21 17:23Basic import of Spatial Genomics 'genePS' seqFISH data into a SpatialExperiment object
- Issue#3estellad2024-08-21 10:20Basic import of Spatial Genomics 'genePS' seqFISH data into a SpatialExperiment object
- Issue comment#3estellad2024-08-15 10:34Basic import of Spatial Genomics 'genePS' seqFISH data into a SpatialExperiment object
- Issue comment#3methornton2024-08-11 16:01Basic import of Spatial Genomics 'genePS' seqFISH data into a SpatialExperiment object
- Issue comment#3estellad2024-08-11 14:37Basic import of Spatial Genomics 'genePS' seqFISH data into a SpatialExperiment object
- Issue comment#3methornton2024-08-06 20:04Basic import of Spatial Genomics 'genePS' seqFISH data into a SpatialExperiment object
- Issue comment#3estellad2024-08-06 19:55Basic import of Spatial Genomics 'genePS' seqFISH data into a SpatialExperiment object
- Issue#3methornton2024-08-05 06:31Basic import of Spatial Genomics 'genePS' seqFISH data into a SpatialExperiment object
- Pull request#2estellad2024-03-22 23:55
- Pull request#2estellad2024-03-22 23:55
- Pull request#1estellad2024-03-22 23:37
- Pull request#1estellad2024-03-22 23:37
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 16 stars here means stars gained during the window, not the repo's star count.