De novo assembler for single molecule sequencing reads using repeat graphs
active 2023-08-16 → 2024-06-19 (UTC)
Complete coverage26,763 / 26,763 hourly files (100%) · 2 absent upstream2023-08-15 → 2026-09-03 (UTC)
Events
549
Pushes
17
Pull requests
11
Issues
149
Stars
99
Forks
18
Activity over time
Daily event counts in the loaded window
Line chart, 309 days from 2023-08-16 to 2024-06-19. Pushes: 17 total, peak 4 in a day. Pull requests: 11 total, peak 1 in a day. Issues: 149 total, peak 9 in a day. Comments: 250 total, peak 17 in a day. Stars: 99 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| fenderglass | 231 | 17 | 4 | 149 |
| Jerry-is-a-mouse | 8 | 0 | 0 | 5 |
| ImagoXV | 7 | 0 | 0 | 4 |
| BABRIGGS | 7 | 0 | 0 | 6 |
| stachyris | 6 | 0 | 0 | 3 |
| grinning-bat | 6 | 0 | 0 | 3 |
| pushkarnk | 5 | 0 | 2 | 2 |
| AzlanNI | 5 | 0 | 0 | 4 |
| jolespin | 5 | 0 | 0 | 2 |
| Ge0rges | 5 | 0 | 1 | 2 |
| ngarud | 4 | 0 | 0 | 2 |
| VendelboNM | 4 | 0 | 0 | 3 |
| JMencius | 4 | 0 | 0 | 2 |
| JWDebler | 4 | 0 | 0 | 2 |
| sjfleck | 4 | 0 | 0 | 3 |
| mesamuels | 4 | 0 | 0 | 3 |
| Fatma116 | 3 | 0 | 0 | 3 |
| alexvasilikop | 3 | 0 | 0 | 1 |
| enriquepola1996 | 3 | 0 | 0 | 1 |
| MrTomRod | 3 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue#710samuelmontgomery2024-06-19 10:38thread exception - system ran out of memory
- Issue comment#702mprous12024-06-15 09:54Correcting bubbles step crash
- Issue#709riyasj3272024-06-12 00:43Suggestions on using --keep haplotypes
- Issue comment#702mprous12024-06-11 17:35Correcting bubbles step crash
- Issue comment#703fenderglass2024-06-10 21:44A couple of installation issues.
- Issue#705fenderglass2024-06-10 21:42Should I filter based on quality ONT 10.4.1 simplex reads before using --nano-hq?
- Issue comment#708fenderglass2024-06-10 21:40No disjointigs were assembled - please check if the read type and genome size parameters are correct
- Issue#708fenderglass2024-06-10 21:40No disjointigs were assembled - please check if the read type and genome size parameters are correct
- Issue comment#707fenderglass2024-06-10 21:39Stuck in repeat stage for low coverage sample
- Issue#707fenderglass2024-06-10 21:39Stuck in repeat stage for low coverage sample
- Issue#700fenderglass2024-06-10 21:34Flye reported an error
- Issue comment#700fenderglass2024-06-10 21:34Flye reported an error
- Issue comment#706fenderglass2024-06-10 21:32Missing & misassembled plasmids
- Issue comment#702fenderglass2024-06-10 21:24Correcting bubbles step crash
- Issue#708lqhungpt2024-06-05 04:40No disjointigs were assembled - please check if the read type and genome size parameters are correct
- Issue comment#707DingJingZhi2024-06-05 00:31Stuck in repeat stage for low coverage sample
- Issue comment#707DingJingZhi2024-06-04 14:11Stuck in repeat stage for low coverage sample
- Issue comment#707JWDebler2024-06-04 12:03Stuck in repeat stage for low coverage sample
- Issue#707JWDebler2024-06-04 02:11Stuck in repeat stage for low coverage sample
- Issue comment#703l-yampolsky2024-05-31 16:21A couple of installation issues.
- Issue comment#387WeichenZhou2024-05-29 17:16Assembled genome contains variants not supported by reads
- Issue comment#705fenderglass2024-05-28 23:26Should I filter based on quality ONT 10.4.1 simplex reads before using --nano-hq?
- Issue comment#703fenderglass2024-05-28 23:14A couple of installation issues.
- Issue comment#700isabelluo2024-05-28 22:22Flye reported an error
- Issue#706peradastra2024-05-28 17:58Missing & misassembled plasmids
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 99 stars here means stars gained during the window, not the repo's star count.