A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules. Config and params were modified to accommodate SCRI's computational resources.I
active 2023-11-17 → 2026-08-14 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1002 days from 2023-11-17 to 2026-08-14. Pushes: 533 total, peak 46 in a day. Pull requests: 27 total, peak 3 in a day. Issues: 45 total, peak 4 in a day. Comments: 89 total, peak 11 in a day. Stars: 19 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| mrvollger | 615 | 521 | 25 | 49 |
| dverac | 17 | 0 | 0 | 13 |
| sjneph | 10 | 6 | 0 | 3 |
| ywang285 | 8 | 0 | 0 | 4 |
| RisaWatanabe | 7 | 0 | 0 | 3 |
| jazsakr | 6 | 0 | 0 | 5 |
| tbenavi1 | 5 | 0 | 0 | 1 |
| cademirch | 5 | 3 | 1 | 0 |
| StephanieBohaczuk | 3 | 0 | 0 | 3 |
| minkinaa | 3 | 2 | 1 | 0 |
| NurislamSheih | 3 | 0 | 0 | 3 |
| bio-Tao | 2 | 0 | 0 | 0 |
| michaelbale | 2 | 0 | 0 | 2 |
| github-actions[bot] | 1 | 1 | 0 | 0 |
| JJJelly77 | 1 | 0 | 0 | 0 |
| Strausyatina | 1 | 0 | 0 | 0 |
| zhengluo-zz | 1 | 0 | 0 | 1 |
| bioluria | 1 | 0 | 0 | 0 |
| kerrybubb | 1 | 0 | 0 | 0 |
| apaul7 | 1 | 0 | 0 | 1 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#54mrvollger2026-05-22 23:27upgrade fibertools-rs version
- Issue#52cademirch2026-05-22 22:15Error: python /software/FIRE/.snakemake/scripts/tmpfd53xgkz.cov.py' returned non-zero exit status 1
- Pull request#53cademirch2026-05-22 22:15
- Issue comment#48mrvollger2026-03-26 23:33fix: guard against division by zero in helper_fdr_peaks_by_fire_elements
- Issue comment#47zhengluo-zz2025-12-19 01:10FIRE on different haplotypes
- Issue#45JJJelly772025-11-10 12:04reference genome
- Pull request#44minkinaa2025-10-29 18:49
- Issue comment#42michaelbale2025-10-07 16:36Memory requirements on FIRE
- Issue comment#42michaelbale2025-10-04 03:10Memory requirements on FIRE
- Issue comment#42mrvollger2025-10-03 20:13Memory requirements on FIRE
- Issue#41bio-Tao2025-09-19 08:46large reference genomes index for bed
- Issue comment#41mrvollger2025-09-17 02:30large reference genomes index for bed
- Issue#40bio-Tao2025-09-17 01:43FIRE score greadter than 100
- Issue#40bio-Tao2025-07-22 08:31FIRE score greadter than 100
- Releasemrvollger2025-06-16 18:13v0.1.3
- Pull request#37mrvollger2025-06-16 18:12
- Issue comment#39dverac2025-05-24 04:38Issue with Arabidopsis data
- Issue comment#39mrvollger2025-05-22 00:38Issue with Arabidopsis data
- Issue comment#35dverac2025-05-21 02:45polars.exceptions.ComputeError: could not parse `-` as dtype `i64` at column 'score' (column number 6)
- Issue#38bioluria2025-05-09 01:04ft fire output result is empty
- Issue comment#35mrvollger2025-03-22 00:03polars.exceptions.ComputeError: could not parse `-` as dtype `i64` at column 'score' (column number 6)
- Issue comment#35jazsakr2025-03-21 22:34polars.exceptions.ComputeError: could not parse `-` as dtype `i64` at column 'score' (column number 6)
- Issue comment#35mrvollger2025-03-20 16:35polars.exceptions.ComputeError: could not parse `-` as dtype `i64` at column 'score' (column number 6)
- Issue comment#35jazsakr2025-03-18 23:25polars.exceptions.ComputeError: could not parse `-` as dtype `i64` at column 'score' (column number 6)
- Issue comment#35mrvollger2025-03-18 16:36polars.exceptions.ComputeError: could not parse `-` as dtype `i64` at column 'score' (column number 6)
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 19 stars here means stars gained during the window, not the repo's star count.