HMM-based footprint caller for single molecule footprinting data
active 2024-08-07 → 2026-07-23 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 716 days from 2024-08-07 to 2026-07-23. Pushes: 89 total, peak 14 in a day. Pull requests: 5 total, peak 2 in a day. Issues: 2 total, peak 1 in a day. Comments: 3 total, peak 3 in a day. Stars: 4 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| mtcicero26 | 97 | 89 | 5 | 3 |
| ryansohny | 1 | 0 | 0 | 0 |
| KunFang93 | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Releasemtcicero262026-04-23 15:39v2.10.1: fix malloc crash on BAMs with malformed MD tags
- Releasemtcicero262026-04-22 18:29v2.10.0: fiberhmm-call --mode daf auto-detects MD tags (no encode step)
- Releasemtcicero262026-04-21 04:31v2.9.3: fiberhmm-extract --ry (DAF IUPAC deamination calls)
- Releasemtcicero262026-04-16 21:46v2.8.0: fiberhmm-call is the CLI; fiberhmm-run removed
- Releasemtcicero262026-04-16 18:43v2.6.8: preserve coordinate sort order in streaming pipeline
- Pull request#12mtcicero262026-03-28 05:48
- Pull request#11mtcicero262026-03-20 21:13
- Pull request#11mtcicero262026-03-20 21:13
- Issue#10ryansohny2026-03-07 18:31Adding FiberHMM to bioconda
- Pull request#9mtcicero262026-03-06 15:55
- Issue comment#5mtcicero262026-02-22 21:38fix: reformat output bed to respect convention
- Issue comment#1mtcicero262026-02-22 21:38Requirments
- Issue comment#2mtcicero262026-02-22 21:37miss generate_emission-probs.py
- Pull request#6mtcicero262026-02-22 21:04
- Issue#2KunFang932025-06-24 15:15miss generate_emission-probs.py
- Releasemtcicero262025-02-19 15:05
- Releasemtcicero262024-11-12 17:39Version 1.3.2
- Releasemtcicero262024-11-12 04:21Version 1.3.1
- Releasemtcicero262024-11-11 18:39FiberHMM v1.3
- Releasemtcicero262024-10-26 17:40small fix
- Releasemtcicero262024-10-26 17:38
- Releasemtcicero262024-10-25 20:59
- Releasemtcicero262024-08-27 17:00FiberHMM v1.1
- Releasemtcicero262024-08-09 20:56FiberHMM v1
- Releasemtcicero262024-08-09 20:54FiberHMM v1
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 4 stars here means stars gained during the window, not the repo's star count.