single cell pathogen alignment and quantification tool
active 2023-12-27 → 2025-06-30 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 552 days from 2023-12-27 to 2025-06-30. Pushes: 39 total, peak 4 in a day. Pull requests: 4 total, peak 2 in a day. Issues: 5 total, peak 2 in a day. Comments: 6 total, peak 2 in a day. Stars: 9 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| lwhitmore | 44 | 37 | 2 | 4 |
| JakeLehle | 4 | 0 | 2 | 1 |
| sm2695 | 3 | 0 | 0 | 1 |
| zacklb | 2 | 2 | 0 | 0 |
| Zhixuan-Jing | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#6JakeLehle2024-11-27 04:09Please remove all pathogen_al_*.csv file outputs from the pipeline as a new release
- Issue comment#6lwhitmore2024-11-26 22:49Please remove all pathogen_al_*.csv file outputs from the pipeline as a new release
- Issue#2lwhitmore2024-11-26 22:38Python version imcompatible with HTSeq
- Issue#6JakeLehle2024-11-26 17:26Please remove all pathogen_al_*.csv file output from the pipeline as a new release
- Issue comment#5sm26952024-11-19 13:28custom reference with the viral sequence added to human reference
- Issue#5sm26952024-11-19 13:28custom reference with the viral sequence added to human reference
- Issue comment#5lwhitmore2024-10-28 16:23custom reference with the viral sequence added to human reference
- Issue#5sm26952024-10-25 10:20custom reference with the viral sequence added to human reference
- Pull request#4JakeLehle2024-07-30 21:10
- Pull request#4JakeLehle2024-07-30 21:10
- Pull request#3lwhitmore2024-04-26 17:21
- Pull request#3lwhitmore2024-04-26 17:20
- Issue comment#2lwhitmore2024-04-08 23:00Python version imcompatible with HTSeq
- Issue comment#2lwhitmore2024-04-08 15:42Python version imcompatible with HTSeq
- Issue#2Zhixuan-Jing2024-04-08 07:36Python version imcompatible with HTSeq
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 9 stars here means stars gained during the window, not the repo's star count.