Program to quickly and accurately assemble plasmids in hybrid sequenced bacterial isolates
active 2023-08-23 → 2026-07-07 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 1050 days from 2023-08-23 to 2026-07-07. Pushes: 128 total, peak 15 in a day. Pull requests: 37 total, peak 4 in a day. Issues: 38 total, peak 3 in a day. Comments: 57 total, peak 3 in a day. Stars: 51 total, peak 3 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| gbouras13 | 217 | 128 | 36 | 35 |
| ayoraind | 8 | 0 | 0 | 6 |
| codecov[bot] | 8 | 0 | 0 | 8 |
| incoherentian | 3 | 0 | 0 | 2 |
| richardstoeckl | 2 | 0 | 0 | 2 |
| wanyuac | 2 | 0 | 0 | 1 |
| MrTomRod | 2 | 0 | 0 | 1 |
| nbat64 | 2 | 0 | 0 | 1 |
| juanjo255 | 2 | 0 | 0 | 0 |
| chen1i6c04 | 2 | 0 | 0 | 0 |
| nextgenusfs | 1 | 0 | 0 | 0 |
| Kir283 | 1 | 0 | 0 | 0 |
| EricDeveaud | 1 | 0 | 0 | 0 |
| awh082834 | 1 | 0 | 0 | 1 |
| songjing99 | 1 | 0 | 0 | 0 |
| citlallibalderas | 1 | 0 | 0 | 0 |
| tinytyranid | 1 | 0 | 1 | 0 |
| rrwick | 1 | 0 | 0 | 0 |
| erinyoung | 1 | 0 | 0 | 0 |
| gaworj | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue comment#82gbouras132026-01-24 06:54Google CoLab notebook error (cell 2)
- Issue#82lomiuo2026-01-24 03:11Google CoLab notebook error (cell 2)
- Issue#79gbouras132026-01-04 23:24Error downloading database
- Issue#78gbouras132026-01-04 23:24Add flag to set canu useGrid=false
- Pull request#80gbouras132026-01-04 23:24
- Issue comment#76MrTomRod2025-12-10 11:04Update Docker container
- Issue#76MrTomRod2025-12-09 16:26Update Docker container
- Releasegbouras132025-09-28 07:30v1.8.1
- Issue#73gbouras132025-09-28 07:29Keep fastqs using plassembler long mode
- Issue#74gbouras132025-09-28 07:29fake_flye is broken; here is fix
- Pull request#75gbouras132025-09-28 07:29
- Issue#74nextgenusfs2025-09-25 18:18fake_flye is broken
- Issue#72juanjo2552025-07-30 04:24About linear and circular plasmids
- Issue comment#72gbouras132025-07-30 03:55About linear and circular plasmids
- Issue#72juanjo2552025-07-30 03:45About linear and circular plasmids
- Issue#71songjing992025-06-24 03:06Question Regarding Plasmid Copy Number Calculation
- Releasegbouras132025-06-23 06:03v1.8.0
- Pull request#70gbouras132025-06-23 06:00
- Pull request#69gbouras132025-06-20 05:08
- Issue#57gbouras132025-06-14 02:58validate_pacbio_model fails if called a second time in the same workflow
- Issue#59gbouras132025-06-14 02:58Something to add to the README.md
- Pull request#68gbouras132025-06-14 02:58
- Issue comment#68gbouras132025-06-14 02:58Fixes #57 Fixes #67
- Issue comment#68codecov[bot]2025-06-13 06:36Fixes #57 Fixes #67
- Pull request#67gbouras132025-06-13 05:12
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 51 stars here means stars gained during the window, not the repo's star count.